Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013220A_C01 KMC013220A_c01
(449 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL92614.1|AC115678_15 hypothetical protein [Dictyostelium di... 33 0.79
ref|NP_702611.1| hypothetical protein [Plasmodium falciparum 3D7... 33 0.79
gb|EAA17537.1| similar to elaC homolog 1 [Plasmodium yoelii yoelii] 33 1.0
gb|ZP_00035974.1| hypothetical protein [Enterococcus faecium] 32 1.3
ref|NP_511065.1| Minichromosome maintenance 6 CG4039-PA gi|49032... 32 2.3
>gb|AAL92614.1|AC115678_15 hypothetical protein [Dictyostelium discoideum]
Length = 934
Score = 33.1 bits (74), Expect = 0.79
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Frame = +3
Query: 90 INLILYISFTIEGR------KNR*YKNYKKNKIKKPGLM*KNKNKKSLNETSDS 233
+ L+L I F + + KNR KN+KKNK K K+KN S+N+++D+
Sbjct: 841 VGLVLNIKFKLYSKTSRILLKNRIKKNFKKNKPTK-----KSKNGNSINQSNDN 889
>ref|NP_702611.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497798|gb|AAN37335.1|AE014828_14 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 5890
Score = 33.1 bits (74), Expect = 0.79
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 18 YFFYGGYVLIQEFYNVYPFVCQSKINLILYISFTIEGRKNR*YKNYKK--NKIKKPGLM* 191
Y Y Y +++EF F+ I I I + E KN+ YK Y K NKIK
Sbjct: 5181 YHIYMFYHIVKEFTLSIHFIKTENIVNIQTIGYDPENIKNKNYKIYYKVMNKIKYFLNKN 5240
Query: 192 KNKNKKSLNETSDSY 236
+ KN ++NE D +
Sbjct: 5241 QKKNISNINENKDKH 5255
>gb|EAA17537.1| similar to elaC homolog 1 [Plasmodium yoelii yoelii]
Length = 787
Score = 32.7 bits (73), Expect = 1.0
Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 4/66 (6%)
Frame = +3
Query: 18 YFFYGGY----VLIQEFYNVYPFVCQSKINLILYISFTIEGRKNR*YKNYKKNKIKKPGL 185
Y+FY + ++I YN+ VC N Y+S +G + + +YK KI +
Sbjct: 3 YYFYNCFFKYLIIIYCVYNISVIVCLRYKNCHFYLSSNNKGDRKCLHNSYKNKKINRKIY 62
Query: 186 M*KNKN 203
+ +NKN
Sbjct: 63 VEENKN 68
>gb|ZP_00035974.1| hypothetical protein [Enterococcus faecium]
Length = 365
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Frame = -1
Query: 191 LHEPRLFYFIFFVIFILTVLP----TFNGERYVKYQI-----DFRLTNKWIYIIEFL 48
L + R F+FF+ + L +LP +FN + K +I DF N+WI + FL
Sbjct: 119 LKKVRPITFLFFLAYFLLILPISGLSFNSDLLSKIKIPAFIMDFIFANRWIIVSSFL 175
>ref|NP_511065.1| Minichromosome maintenance 6 CG4039-PA
gi|4903290|gb|AAD32858.1|AF124744_1 DNA replication
factor MCM6 [Drosophila melanogaster]
gi|7290738|gb|AAF46184.1| CG4039-PA [Drosophila
melanogaster]
Length = 817
Score = 31.6 bits (70), Expect = 2.3
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 42 LIQEFYNVYPFVCQSKINLI 101
+I+E+Y++YPF+CQS N +
Sbjct: 73 IIEEYYHIYPFLCQSVSNYV 92
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,185,970
Number of Sequences: 1393205
Number of extensions: 7553878
Number of successful extensions: 19741
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 18575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19550
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
