Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013217A_C01 KMC013217A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568129.1| putative protein; protein id: At5g03900.1, supp... 83 1e-15
dbj|BAC43704.1| unknown protein [Arabidopsis thaliana] 83 1e-15
gb|AAM61083.1| unknown [Arabidopsis thaliana] 83 1e-15
dbj|BAB08616.1| emb|CAB85510.1~gene_id:MED24.20~strong similarit... 83 1e-15
pir||T48417 hypothetical protein F8F6.110 - Arabidopsis thaliana... 74 9e-13
>ref|NP_568129.1| putative protein; protein id: At5g03900.1, supported by cDNA:
110188. [Arabidopsis thaliana]
Length = 523
Score = 83.2 bits (204), Expect = 1e-15
Identities = 36/51 (70%), Positives = 48/51 (93%)
Frame = -1
Query: 492 LSQKLISARDMAQKTVIGKDQIVYSTDKDLLEQDYDAREWDKKFRELERSD 340
L +KL+SARDMAQKTVIGKD+IVYSTD+D++EQ+Y+ EWD++F+ELE+SD
Sbjct: 473 LRRKLLSARDMAQKTVIGKDRIVYSTDRDMMEQNYETDEWDRRFKELEKSD 523
>dbj|BAC43704.1| unknown protein [Arabidopsis thaliana]
Length = 523
Score = 83.2 bits (204), Expect = 1e-15
Identities = 36/51 (70%), Positives = 48/51 (93%)
Frame = -1
Query: 492 LSQKLISARDMAQKTVIGKDQIVYSTDKDLLEQDYDAREWDKKFRELERSD 340
L +KL+SARDMAQKTVIGKD+IVYSTD+D++EQ+Y+ EWD++F+ELE+SD
Sbjct: 473 LRRKLLSARDMAQKTVIGKDRIVYSTDRDMMEQNYETDEWDRRFKELEKSD 523
>gb|AAM61083.1| unknown [Arabidopsis thaliana]
Length = 523
Score = 83.2 bits (204), Expect = 1e-15
Identities = 36/51 (70%), Positives = 48/51 (93%)
Frame = -1
Query: 492 LSQKLISARDMAQKTVIGKDQIVYSTDKDLLEQDYDAREWDKKFRELERSD 340
L +KL+SARDMAQKTVIGKD+IVYSTD+D++EQ+Y+ EWD++F+ELE+SD
Sbjct: 473 LRRKLLSARDMAQKTVIGKDRIVYSTDRDMMEQNYETDEWDRRFKELEKSD 523
>dbj|BAB08616.1| emb|CAB85510.1~gene_id:MED24.20~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 495
Score = 83.2 bits (204), Expect = 1e-15
Identities = 36/51 (70%), Positives = 48/51 (93%)
Frame = -1
Query: 492 LSQKLISARDMAQKTVIGKDQIVYSTDKDLLEQDYDAREWDKKFRELERSD 340
L +KL+SARDMAQKTVIGKD+IVYSTD+D++EQ+Y+ EWD++F+ELE+SD
Sbjct: 445 LRRKLLSARDMAQKTVIGKDRIVYSTDRDMMEQNYETDEWDRRFKELEKSD 495
>pir||T48417 hypothetical protein F8F6.110 - Arabidopsis thaliana
gi|7406400|emb|CAB85510.1| putative protein [Arabidopsis
thaliana]
Length = 757
Score = 73.9 bits (180), Expect = 9e-13
Identities = 31/46 (67%), Positives = 43/46 (93%)
Frame = -1
Query: 492 LSQKLISARDMAQKTVIGKDQIVYSTDKDLLEQDYDAREWDKKFRE 355
L +KL+SARDMAQKTVIGKD+IVYSTD+D++EQ+Y+ EWD++F++
Sbjct: 452 LRRKLLSARDMAQKTVIGKDRIVYSTDRDMMEQNYETDEWDRRFKD 497
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,211,952
Number of Sequences: 1393205
Number of extensions: 6679768
Number of successful extensions: 16548
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16547
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
