Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013201A_C01 KMC013201A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02958.1| gene_id:MVI11.8~unknown protein [Arabidopsis tha... 103 2e-21
ref|NP_188549.2| hypothetical protein; protein id: At3g19180.1, ... 103 2e-21
gb|AAL66980.1| unknown protein [Arabidopsis thaliana] 103 2e-21
gb|EAA13795.1| agCP8303 [Anopheles gambiae str. PEST] 32 6.4
ref|ZP_00130212.1| hypothetical protein [Desulfovibrio desulfuri... 32 6.4
>dbj|BAB02958.1| gene_id:MVI11.8~unknown protein [Arabidopsis thaliana]
Length = 841
Score = 103 bits (256), Expect = 2e-21
Identities = 49/74 (66%), Positives = 57/74 (76%)
Frame = -3
Query: 538 WRFLLLKLSVLRADILSDGNETDMAEIEALLEEAAELVDSSQQKNPNYLSTYKVRYVLKM 359
WRF+LL L VL+A I DG + AEIEALLEEAAELVD SQ KN Y STYK+RY+LK
Sbjct: 765 WRFVLLHLEVLQAHIFEDGIAGEAAEIEALLEEAAELVDESQPKNAKYYSTYKIRYILKK 824
Query: 358 QDDGSWKFCEGDIR 317
Q+DG WKFC+ DI+
Sbjct: 825 QEDGLWKFCQSDIQ 838
>ref|NP_188549.2| hypothetical protein; protein id: At3g19180.1, supported by cDNA:
gi_18377659 [Arabidopsis thaliana]
Length = 819
Score = 103 bits (256), Expect = 2e-21
Identities = 49/74 (66%), Positives = 57/74 (76%)
Frame = -3
Query: 538 WRFLLLKLSVLRADILSDGNETDMAEIEALLEEAAELVDSSQQKNPNYLSTYKVRYVLKM 359
WRF+LL L VL+A I DG + AEIEALLEEAAELVD SQ KN Y STYK+RY+LK
Sbjct: 743 WRFVLLHLEVLQAHIFEDGIAGEAAEIEALLEEAAELVDESQPKNAKYYSTYKIRYILKK 802
Query: 358 QDDGSWKFCEGDIR 317
Q+DG WKFC+ DI+
Sbjct: 803 QEDGLWKFCQSDIQ 816
>gb|AAL66980.1| unknown protein [Arabidopsis thaliana]
Length = 819
Score = 103 bits (256), Expect = 2e-21
Identities = 49/74 (66%), Positives = 57/74 (76%)
Frame = -3
Query: 538 WRFLLLKLSVLRADILSDGNETDMAEIEALLEEAAELVDSSQQKNPNYLSTYKVRYVLKM 359
WRF+LL L VL+A I DG + AEIEALLEEAAELVD SQ KN Y STYK+RY+LK
Sbjct: 743 WRFVLLHLEVLQAHIFEDGIAGEAAEIEALLEEAAELVDESQPKNAKYYSTYKIRYILKK 802
Query: 358 QDDGSWKFCEGDIR 317
Q+DG WKFC+ DI+
Sbjct: 803 QEDGLWKFCQSDIQ 816
>gb|EAA13795.1| agCP8303 [Anopheles gambiae str. PEST]
Length = 791
Score = 31.6 bits (70), Expect = 6.4
Identities = 15/47 (31%), Positives = 28/47 (58%)
Frame = -3
Query: 277 ITDIAANLDPSLDPI*ADDDILRISLYAI*VS*VVYPPSPPLLAHNY 137
I D+ ++++ SLD + + +D+LR ++A V+ P + LL NY
Sbjct: 524 IVDLHSHIEHSLDQVYSREDVLRYIMFARQFKPVIQPEAMALLVENY 570
>ref|ZP_00130212.1| hypothetical protein [Desulfovibrio desulfuricans G20]
Length = 3194
Score = 31.6 bits (70), Expect = 6.4
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -3
Query: 538 WRFLLLKLSVLRADILSDGNETDMAEIEAL---LEEAAELVDSSQQK 407
W L+ + +LRA + DGN+ +AE+ L ++E A+L + QQK
Sbjct: 1893 WNRLIARHDMLRAVFMPDGNQKILAEVPRLTIPVKELADLPAAEQQK 1939
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,248,620
Number of Sequences: 1393205
Number of extensions: 8308239
Number of successful extensions: 17921
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17921
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
