Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013186A_C01 KMC013186A_c01
(659 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174323.1| auxin response transcription factor(ARF6); prot... 119 5e-26
dbj|BAB85915.1| auxin response factor 6b [Oryza sativa] 114 1e-24
ref|NP_198518.1| auxin response transcription factor(ARF8); prot... 96 4e-19
dbj|BAB85918.1| auxin response factor 8 [Oryza sativa] 94 1e-18
ref|NP_173356.1| auxin response factor, putative; protein id: At... 88 9e-17
>ref|NP_174323.1| auxin response transcription factor(ARF6); protein id: At1g30330.1,
supported by cDNA: gi_4102599 [Arabidopsis thaliana]
gi|25403108|pir||F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana
gi|4102600|gb|AAD01513.1| ARF6 [Arabidopsis thaliana]
gi|12322119|gb|AAG51093.1|AC025295_1 auxin response
factor 6 (ARF6) [Arabidopsis thaliana]
Length = 933
Score = 119 bits (297), Expect = 5e-26
Identities = 67/114 (58%), Positives = 85/114 (73%), Gaps = 6/114 (5%)
Frame = -2
Query: 658 ELARIFGPEGQLEDPMTLRSGWQLVFVDRENDILLLGDDPWQEFVNNVSYIKILSPLEVP 479
ELAR+FG EGQLEDP+ RSGWQLVFVDREND+LLLGDDPW EFV++V IKILSP EV
Sbjct: 823 ELARMFGLEGQLEDPV--RSGWQLVFVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQ 880
Query: 478 EMG-RSVATSTSSPG----HQLSNHGNSCDDYASRPELRSSRNGVAPM-GSFHY 335
+MG R + S+P +L ++GN CDD+ +R + R+ NG+A + GSF+Y
Sbjct: 881 QMGKRGLELLNSAPSSNNVDKLPSNGN-CDDFGNRSDPRNLGNGIASVGGSFNY 933
>dbj|BAB85915.1| auxin response factor 6b [Oryza sativa]
Length = 880
Score = 114 bits (285), Expect = 1e-24
Identities = 59/108 (54%), Positives = 75/108 (68%)
Frame = -2
Query: 658 ELARIFGPEGQLEDPMTLRSGWQLVFVDRENDILLLGDDPWQEFVNNVSYIKILSPLEVP 479
EL R+FG EGQLEDP+ RSGWQLVFVDRENDILL+GDDPWQEF N+V IKILSP EV
Sbjct: 776 ELERLFGLEGQLEDPV--RSGWQLVFVDRENDILLVGDDPWQEFANSVWCIKILSPQEVQ 833
Query: 478 EMGRSVATSTSSPGHQLSNHGNSCDDYASRPELRSSRNGVAPMGSFHY 335
++ R SSPG ++ N+CDDY++ +++ +A + Y
Sbjct: 834 QLVRGGDGLLSSPGARM-QQSNACDDYSASHNMQNIAGNIASVAPLDY 880
>ref|NP_198518.1| auxin response transcription factor(ARF8); protein id: At5g37020.1,
supported by cDNA: gi_4104930 [Arabidopsis thaliana]
gi|4104931|gb|AAD02219.1| auxin response factor 8
[Arabidopsis thaliana]
Length = 811
Score = 95.9 bits (237), Expect = 4e-19
Identities = 47/63 (74%), Positives = 53/63 (83%)
Frame = -2
Query: 658 ELARIFGPEGQLEDPMTLRSGWQLVFVDRENDILLLGDDPWQEFVNNVSYIKILSPLEVP 479
EL ++F EG LEDP LRSGWQLVFVD+ENDILLLGDDPW+ FVNNV YIKILSP +V
Sbjct: 734 ELGKMFAIEGLLEDP--LRSGWQLVFVDKENDILLLGDDPWESFVNNVWYIKILSPEDVH 791
Query: 478 EMG 470
+MG
Sbjct: 792 QMG 794
>dbj|BAB85918.1| auxin response factor 8 [Oryza sativa]
Length = 795
Score = 94.4 bits (233), Expect = 1e-18
Identities = 45/64 (70%), Positives = 55/64 (85%)
Frame = -2
Query: 658 ELARIFGPEGQLEDPMTLRSGWQLVFVDRENDILLLGDDPWQEFVNNVSYIKILSPLEVP 479
EL ++FG +GQL+DP RSGWQLVFVDREND+LLLGDDPW+ FVN+V YIKILSP +V
Sbjct: 725 ELGQMFGIKGQLDDPD--RSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVH 782
Query: 478 EMGR 467
+MG+
Sbjct: 783 KMGK 786
>ref|NP_173356.1| auxin response factor, putative; protein id: At1g19220.1 [Arabidopsis
thaliana]
Length = 1086
Score = 88.2 bits (217), Expect = 9e-17
Identities = 47/86 (54%), Positives = 61/86 (70%), Gaps = 3/86 (3%)
Frame = -2
Query: 658 ELARIFGPEGQLEDPMTLRSGWQLVFVDRENDILLLGDDPWQEFVNNVSYIKILSPLEVP 479
+LAR+FG EGQLEDP+T S W+LV+ D ENDILL+GDDPW+EFVN V IKILS +EV
Sbjct: 987 DLARMFGIEGQLEDPLT--SDWKLVYTDHENDILLVGDDPWEEFVNCVQNIKILSSVEVQ 1044
Query: 478 EM---GRSVATSTSSPGHQLSNHGNS 410
+M G A T++ ++ GN+
Sbjct: 1045 QMSLDGDLAAIPTTNQACSETDSGNA 1070
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,385,913
Number of Sequences: 1393205
Number of extensions: 12121208
Number of successful extensions: 28007
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 27094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27975
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
