Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013168A_C01 KMC013168A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197670.1| alpha-adaptin C homolog; protein id: At5g22780.... 372 e-102
ref|NP_197669.1| alpha-adaptin; protein id: At5g22770.1, support... 372 e-102
pir||T51054 related to alpha-adaptin C [imported] - Neurospora c... 214 9e-55
ref|XP_218624.1| similar to adaptor-related protein complex AP-2... 212 3e-54
gb|AAL11040.1|AF289221_2 alpha-adaptin A related protein [Homo s... 212 3e-54
>ref|NP_197670.1| alpha-adaptin C homolog; protein id: At5g22780.1, supported by
cDNA: gi_20466359 [Arabidopsis thaliana]
gi|20466360|gb|AAM20497.1| alpha-adaptin C-like protein
[Arabidopsis thaliana]
Length = 1013
Score = 372 bits (956), Expect = e-102
Identities = 184/199 (92%), Positives = 192/199 (96%)
Frame = -3
Query: 602 DIRNCQNKTQERLRVDKELGNIRTRFKNEKALTPYEKKKYVWKMLYIYMLGYDVDFGHME 423
D+RNCQNK ERLRVDKELGNIRT FKNEK LTPY+KKKYVWKMLYI+MLGYDVDFGHME
Sbjct: 13 DVRNCQNKEAERLRVDKELGNIRTCFKNEKVLTPYKKKKYVWKMLYIHMLGYDVDFGHME 72
Query: 422 AVSLISAPKYPEKQVGYIVTSSLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNI 243
AVSLISAPKYPEKQVGYIVTS LLNENHDFL+LAINTVRNDIIGRNETFQCLALT+VGNI
Sbjct: 73 AVSLISAPKYPEKQVGYIVTSCLLNENHDFLKLAINTVRNDIIGRNETFQCLALTLVGNI 132
Query: 242 GGREFAESLAPDVQKLLLSSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDE 63
GGR+FAESLAPDVQKLL+SSSCRPLVRKKAALCLLRL+RKNPD VNVDGWADRMAQLLDE
Sbjct: 133 GGRDFAESLAPDVQKLLISSSCRPLVRKKAALCLLRLFRKNPDAVNVDGWADRMAQLLDE 192
Query: 62 RDLGVLTSSMSLLVALVSN 6
RDLGVLTSS SLLVALVSN
Sbjct: 193 RDLGVLTSSTSLLVALVSN 211
>ref|NP_197669.1| alpha-adaptin; protein id: At5g22770.1, supported by cDNA:
gi_20466204 [Arabidopsis thaliana]
gi|20466205|gb|AAM20420.1| alpha-adaptin [Arabidopsis
thaliana]
Length = 1012
Score = 372 bits (956), Expect = e-102
Identities = 184/199 (92%), Positives = 192/199 (96%)
Frame = -3
Query: 602 DIRNCQNKTQERLRVDKELGNIRTRFKNEKALTPYEKKKYVWKMLYIYMLGYDVDFGHME 423
D+RNCQNK ERLRVDKELGNIRT FKNEK LTPY+KKKYVWKMLYI+MLGYDVDFGHME
Sbjct: 13 DVRNCQNKEAERLRVDKELGNIRTCFKNEKVLTPYKKKKYVWKMLYIHMLGYDVDFGHME 72
Query: 422 AVSLISAPKYPEKQVGYIVTSSLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNI 243
AVSLISAPKYPEKQVGYIVTS LLNENHDFL+LAINTVRNDIIGRNETFQCLALT+VGNI
Sbjct: 73 AVSLISAPKYPEKQVGYIVTSCLLNENHDFLKLAINTVRNDIIGRNETFQCLALTLVGNI 132
Query: 242 GGREFAESLAPDVQKLLLSSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDE 63
GGR+FAESLAPDVQKLL+SSSCRPLVRKKAALCLLRL+RKNPD VNVDGWADRMAQLLDE
Sbjct: 133 GGRDFAESLAPDVQKLLISSSCRPLVRKKAALCLLRLFRKNPDAVNVDGWADRMAQLLDE 192
Query: 62 RDLGVLTSSMSLLVALVSN 6
RDLGVLTSS SLLVALVSN
Sbjct: 193 RDLGVLTSSTSLLVALVSN 211
>pir||T51054 related to alpha-adaptin C [imported] - Neurospora crassa
gi|9368557|emb|CAB98218.1| related to alpha-adaptin C
[Neurospora crassa] gi|28917801|gb|EAA27490.1|
hypothetical protein ( related to alpha-adaptin C
[imported] - Neurospora crassa emb|CAB98218.1|
(AL390091) related to alpha-adaptin C [Neurospora
crassa] )
Length = 988
Score = 214 bits (544), Expect = 9e-55
Identities = 102/199 (51%), Positives = 147/199 (73%)
Frame = -3
Query: 602 DIRNCQNKTQERLRVDKELGNIRTRFKNEKALTPYEKKKYVWKMLYIYMLGYDVDFGHME 423
D+RN + + E R++KEL NIR +FK + +L+ Y KKKYV K+LYIY+LG++VDFGH+E
Sbjct: 29 DLRNARARELEEKRINKELANIRQKFK-DGSLSGYHKKKYVCKLLYIYILGWNVDFGHLE 87
Query: 422 AVSLISAPKYPEKQVGYIVTSSLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNI 243
AV+LISA KY EKQ+GY+ + L+E H+ L L +N++R D++ NE F CLAL + N+
Sbjct: 88 AVNLISATKYSEKQIGYLAMTLFLHEKHELLHLVVNSIRKDLMDHNELFNCLALHAIANV 147
Query: 242 GGREFAESLAPDVQKLLLSSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDE 63
GG+E E+L+P+V +LL+S + + V+KKAAL LLRLYRKNPD+V WA+R+ ++D+
Sbjct: 148 GGKEMGEALSPEVHRLLISPTSKAFVKKKAALTLLRLYRKNPDIVQAQ-WAERIISIMDD 206
Query: 62 RDLGVLTSSMSLLVALVSN 6
DLGV S SL++AL +
Sbjct: 207 TDLGVALSVTSLVMALAQD 225
>ref|XP_218624.1| similar to adaptor-related protein complex AP-2, alpha 1 subunit
[Mus musculus] [Rattus norvegicus]
Length = 939
Score = 212 bits (539), Expect = 3e-54
Identities = 96/196 (48%), Positives = 144/196 (72%)
Frame = -3
Query: 602 DIRNCQNKTQERLRVDKELGNIRTRFKNEKALTPYEKKKYVWKMLYIYMLGYDVDFGHME 423
DIRNC++K E R++KEL NIR++FK +KAL Y KKKYV K+L+I++LG+D+DFGHME
Sbjct: 19 DIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHME 78
Query: 422 AVSLISAPKYPEKQVGYIVTSSLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNI 243
AV+L+S+ KY EKQ+GY+ S L+N N + +RL N ++ND+ RN TF CLAL + N+
Sbjct: 79 AVNLLSSNKYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMCLALHCIANV 138
Query: 242 GGREFAESLAPDVQKLLLSSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDE 63
G RE E+ A D+ ++L++ V++ AALCLLRLY+ +PD+V + W R+ LL++
Sbjct: 139 GSREMGEAFAADIPRILVAGDSMDSVKQSAALCLLRLYKASPDLVPMGEWTARVVHLLND 198
Query: 62 RDLGVLTSSMSLLVAL 15
+ +GV+T+++SL+ L
Sbjct: 199 QHMGVVTAAVSLITCL 214
>gb|AAL11040.1|AF289221_2 alpha-adaptin A related protein [Homo sapiens]
Length = 955
Score = 212 bits (539), Expect = 3e-54
Identities = 96/196 (48%), Positives = 144/196 (72%)
Frame = -3
Query: 602 DIRNCQNKTQERLRVDKELGNIRTRFKNEKALTPYEKKKYVWKMLYIYMLGYDVDFGHME 423
DIRNC++K E R++KEL NIR++FK +KAL Y KKKYV K+L+I++LG+D+DFGHME
Sbjct: 19 DIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHME 78
Query: 422 AVSLISAPKYPEKQVGYIVTSSLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNI 243
AV+L+S+ KY EKQ+GY+ S L+N N + +RL N ++ND+ RN TF CLAL + N+
Sbjct: 79 AVNLLSSNKYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMCLALHCIANV 138
Query: 242 GGREFAESLAPDVQKLLLSSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDE 63
G RE E+ A D+ ++L++ V++ AALCLLRLY+ +PD+V + W R+ LL++
Sbjct: 139 GSREMGEAFAADIPRILVAGDSMDSVKQSAALCLLRLYKASPDLVPMGEWTARVVHLLND 198
Query: 62 RDLGVLTSSMSLLVAL 15
+ +GV+T+++SL+ L
Sbjct: 199 QHMGVVTAAVSLITCL 214
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,557,999
Number of Sequences: 1393205
Number of extensions: 11162287
Number of successful extensions: 36150
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 34368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36068
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
