Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013161A_C01 KMC013161A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC05042.1| unnamed protein product [Homo sapiens] 36 0.44
ref|XP_135066.1| RIKEN cDNA 4930486B16 [Mus musculus] 36 0.44
ref|XP_236769.1| similar to hypothetical protein FLJ40097 [Homo ... 36 0.44
ref|NP_689829.2| tripartite motif-containing 42 [Homo sapiens] g... 36 0.44
ref|NP_084495.1| RIKEN cDNA 4930486B16 [Mus musculus] gi|1285996... 36 0.44
>dbj|BAC05042.1| unnamed protein product [Homo sapiens]
Length = 708
Score = 35.8 bits (81), Expect = 0.44
Identities = 16/46 (34%), Positives = 25/46 (53%)
Frame = -1
Query: 519 KNHENEEACHCYHCGIPSELSSCNWNTCGIPSELSSMCCCTCAKSL 382
K+ N + CHC C SE +C+W C ++ + CCCT + +L
Sbjct: 45 KDERNCQFCHCT-C---SESPNCHWCCCSWANDPNCKCCCTASSNL 86
>ref|XP_135066.1| RIKEN cDNA 4930486B16 [Mus musculus]
Length = 723
Score = 35.8 bits (81), Expect = 0.44
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 519 KNHENEEACHCYHCGIPSELSSCNWNTCGIPSELSSMCCCTCAKSLK 379
K+ N + CHC C +E +C+W C ++ + CCCT + +LK
Sbjct: 45 KDERNCQFCHCT-C---AENPNCHWCCCSWANDPNCKCCCTASTNLK 87
>ref|XP_236769.1| similar to hypothetical protein FLJ40097 [Homo sapiens] [Rattus
norvegicus]
Length = 723
Score = 35.8 bits (81), Expect = 0.44
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 519 KNHENEEACHCYHCGIPSELSSCNWNTCGIPSELSSMCCCTCAKSLK 379
K+ N + CHC C +E +C+W C ++ + CCCT + +LK
Sbjct: 45 KDERNCQFCHCT-C---AENPNCHWCCCSWANDPNCKCCCTASTNLK 87
>ref|NP_689829.2| tripartite motif-containing 42 [Homo sapiens]
gi|27451493|gb|AAO14945.1| tripartite motif protein 42;
TRIM42 [Homo sapiens]
Length = 723
Score = 35.8 bits (81), Expect = 0.44
Identities = 16/46 (34%), Positives = 25/46 (53%)
Frame = -1
Query: 519 KNHENEEACHCYHCGIPSELSSCNWNTCGIPSELSSMCCCTCAKSL 382
K+ N + CHC C SE +C+W C ++ + CCCT + +L
Sbjct: 45 KDERNCQFCHCT-C---SESPNCHWCCCSWANDPNCKCCCTASSNL 86
>ref|NP_084495.1| RIKEN cDNA 4930486B16 [Mus musculus] gi|12859963|dbj|BAB31824.1|
unnamed protein product [Mus musculus]
Length = 723
Score = 35.8 bits (81), Expect = 0.44
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 519 KNHENEEACHCYHCGIPSELSSCNWNTCGIPSELSSMCCCTCAKSLK 379
K+ N + CHC C +E +C+W C ++ + CCCT + +LK
Sbjct: 45 KDERNCQFCHCT-C---AENPNCHWCCCSWANDPNCKCCCTASTNLK 87
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,433,152
Number of Sequences: 1393205
Number of extensions: 10806265
Number of successful extensions: 32142
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 30945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32105
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
