Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013160A_C01 KMC013160A_c01
(462 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178101.1| unknown protein; protein id: At1g79830.1 [Arabi... 71 6e-12
ref|NP_650778.1| CG6026-PA [Drosophila melanogaster] gi|10726612... 35 0.38
ref|NP_776304.1| coagulation factor V (proaccelerin, labile fact... 34 0.64
gb|AAO51892.1| similar to Plasmodium falciparum (isolate 3D7). H... 34 0.64
gb|AAA30513.1| factor V 34 0.64
>ref|NP_178101.1| unknown protein; protein id: At1g79830.1 [Arabidopsis thaliana]
gi|25406610|pir||C96829 unknown protein F19K16.21
[imported] - Arabidopsis thaliana
gi|12324587|gb|AAG52248.1|AC011717_16 unknown protein;
70672-76070 [Arabidopsis thaliana]
Length = 918
Score = 70.9 bits (172), Expect = 6e-12
Identities = 34/48 (70%), Positives = 40/48 (82%)
Frame = +2
Query: 293 MAWFNNAKTSWGNFPDLAGAVNKLQESVKSIEKNFDTALGFEEKSESS 436
MAWF+ K S G FPDL GAVNK QESVK+IEKNFD ALGF++KS+S+
Sbjct: 1 MAWFSG-KVSLGGFPDLTGAVNKFQESVKNIEKNFDNALGFDDKSDSA 47
>ref|NP_650778.1| CG6026-PA [Drosophila melanogaster] gi|10726612|gb|AAF55629.2|
CG6026-PA [Drosophila melanogaster]
Length = 1542
Score = 35.0 bits (79), Expect = 0.38
Identities = 21/68 (30%), Positives = 30/68 (43%)
Frame = +1
Query: 49 HQIEPPFFSSQPNTPQSPTTLSSLFNDSKLISCETAASTTQPFGLPCFDSSIRHIPKSRN 228
HQ PP QP+ P+ P TLS +FN A + Q G + I+ I S+
Sbjct: 478 HQPLPPTLQQQPSPPKPPMTLSDIFNSLAEEESNVAQNYQQNQGFDAQGNLIQPIAPSKP 537
Query: 229 SEVSTRLP 252
S + + P
Sbjct: 538 SPFAMQQP 545
>ref|NP_776304.1| coagulation factor V (proaccelerin, labile factor) [Bos taurus]
gi|2493324|sp|Q28107|FA5_BOVIN Coagulation factor V
precursor (Activated protein C cofactor)
gi|1070460|pir||KFBO5 coagulation factor V precursor -
bovine gi|163038|gb|AAA30512.1| factor V
Length = 2211
Score = 34.3 bits (77), Expect = 0.64
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -2
Query: 371 SPEAYSQLPPNQGSSPMKSSHY*TTPSRKS*KPTHITNSKGNR 243
SPE + Q+ P Q S P S+ T PS +S PTH T + NR
Sbjct: 1111 SPEEHYQIFPIQDSDPTHST---TAPSNRSPDPTHSTTAPSNR 1150
>gb|AAO51892.1| similar to Plasmodium falciparum (isolate 3D7). Hypothetical
protein [Dictyostelium discoideum]
Length = 959
Score = 34.3 bits (77), Expect = 0.64
Identities = 16/48 (33%), Positives = 27/48 (55%)
Frame = +2
Query: 317 TSWGNFPDLAGAVNKLQESVKSIEKNFDTALGFEEKSESSNDGGNEAS 460
+ WGNF AV K+ +K++EK+ D A+G ++ E + + N S
Sbjct: 2 SKWGNFNFDISAVGKV---IKNVEKSIDKAIGIPDQPEGTENNDNNTS 46
>gb|AAA30513.1| factor V
Length = 2206
Score = 34.3 bits (77), Expect = 0.64
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -2
Query: 371 SPEAYSQLPPNQGSSPMKSSHY*TTPSRKS*KPTHITNSKGNR 243
SPE + Q+ P Q S P S+ T PS +S PTH T + NR
Sbjct: 1106 SPEEHYQIFPIQDSDPTHST---TAPSNRSPDPTHSTTAPSNR 1145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,401,847
Number of Sequences: 1393205
Number of extensions: 8137827
Number of successful extensions: 29046
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 27277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28997
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
