Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013155A_C01 KMC013155A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192009.1| putative protein; protein id: At4g01000.1, supp... 111 7e-24
dbj|BAC01254.1| P0019E03.13 [Oryza sativa (japonica cultivar-gro... 104 8e-22
ref|NP_689821.1| hypothetical protein FLJ35382 [Homo sapiens] gi... 70 2e-11
pir||T22586 hypothetical protein F53F4.14 - Caenorhabditis elegans 70 2e-11
ref|NP_506378.1| Putative nuclear protein, with a coiled coil-4 ... 70 2e-11
>ref|NP_192009.1| putative protein; protein id: At4g01000.1, supported by cDNA:
gi_16209706 [Arabidopsis thaliana]
gi|7486357|pir||T10540 hypothetical protein F3I3.20 -
Arabidopsis thaliana gi|5262154|emb|CAB45783.1| putative
protein [Arabidopsis thaliana]
gi|7267597|emb|CAB80909.1| putative protein [Arabidopsis
thaliana] gi|16209707|gb|AAL14410.1| AT4g01000/F3I3_20
[Arabidopsis thaliana]
Length = 415
Score = 111 bits (277), Expect = 7e-24
Identities = 54/63 (85%), Positives = 60/63 (94%)
Frame = -1
Query: 480 EPLNFDVFNSATELEVLGLEKLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLL 301
EPLNFD FNS ++EVLG+E+LK+ELQSRGLKCGGTL+ERAARLFLLKSTPLDKLPKKLL
Sbjct: 353 EPLNFDDFNSPADMEVLGMERLKTELQSRGLKCGGTLRERAARLFLLKSTPLDKLPKKLL 412
Query: 300 AKK 292
AKK
Sbjct: 413 AKK 415
>dbj|BAC01254.1| P0019E03.13 [Oryza sativa (japonica cultivar-group)]
Length = 444
Score = 104 bits (259), Expect = 8e-22
Identities = 51/75 (68%), Positives = 62/75 (82%)
Frame = -1
Query: 519 EESSPSTSIPALEEPLNFDVFNSATELEVLGLEKLKSELQSRGLKCGGTLQERAARLFLL 340
EE + P +EPL+ +++SA ELEVLG+E+LK ELQ+RGLKCGGTLQERAARLFLL
Sbjct: 364 EEPANGNISPLSQEPLDLTIYSSAAELEVLGMERLKLELQNRGLKCGGTLQERAARLFLL 423
Query: 339 KSTPLDKLPKKLLAK 295
K+TPL+KLPKKL AK
Sbjct: 424 KTTPLEKLPKKLFAK 438
>ref|NP_689821.1| hypothetical protein FLJ35382 [Homo sapiens]
gi|21751360|dbj|BAC03952.1| unnamed protein product
[Homo sapiens]
Length = 356
Score = 69.7 bits (169), Expect = 2e-11
Identities = 37/75 (49%), Positives = 50/75 (66%)
Frame = -1
Query: 519 EESSPSTSIPALEEPLNFDVFNSATELEVLGLEKLKSELQSRGLKCGGTLQERAARLFLL 340
+ES P ++ +E ++ F S ELE+LGLEKLK EL + GLKCGGTLQERAARLF +
Sbjct: 276 QESQPGNAVID-KETIDLLAFTSVAELELLGLEKLKCELMALGLKCGGTLQERAARLFSV 334
Query: 339 KSTPLDKLPKKLLAK 295
+ +++ L AK
Sbjct: 335 RGLAKEQIDPALFAK 349
>pir||T22586 hypothetical protein F53F4.14 - Caenorhabditis elegans
Length = 612
Score = 69.7 bits (169), Expect = 2e-11
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = -1
Query: 531 AAVNEESSPSTSI--PALEEPLNFDVFNSATELEVLGLEKLKSELQSRGLKCGGTLQERA 358
+A N + P + P P++ D F SA +LE+LGLE LKS L RGLKCGG+L ERA
Sbjct: 505 SASNIDDLPKIDVKTPCEYGPISLDDFTSAEDLELLGLEHLKSALNDRGLKCGGSLVERA 564
Query: 357 ARLFLLKSTPLDKLPKKLLAKK*KKQ 280
ARL+ +K + PK +L + KK+
Sbjct: 565 ARLWCVKGKQPREYPKNILTPELKKK 590
>ref|NP_506378.1| Putative nuclear protein, with a coiled coil-4 domain, of
eukaryotic origin [Caenorhabditis elegans]
gi|18369721|emb|CAB54259.5| Hypothetical protein
F53F4.14 [Caenorhabditis elegans]
gi|18376522|emb|CAB54256.5| Hypothetical protein
F53F4.14 [Caenorhabditis elegans]
Length = 500
Score = 69.7 bits (169), Expect = 2e-11
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = -1
Query: 531 AAVNEESSPSTSI--PALEEPLNFDVFNSATELEVLGLEKLKSELQSRGLKCGGTLQERA 358
+A N + P + P P++ D F SA +LE+LGLE LKS L RGLKCGG+L ERA
Sbjct: 393 SASNIDDLPKIDVKTPCEYGPISLDDFTSAEDLELLGLEHLKSALNDRGLKCGGSLVERA 452
Query: 357 ARLFLLKSTPLDKLPKKLLAKK*KKQ 280
ARL+ +K + PK +L + KK+
Sbjct: 453 ARLWCVKGKQPREYPKNILTPELKKK 478
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,814,890
Number of Sequences: 1393205
Number of extensions: 9117928
Number of successful extensions: 24038
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 23314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24029
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
