Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013153A_C01 KMC013153A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P46297|RS23_FRAAN 40S RIBOSOMAL PROTEIN S23 (S12) gi|1362041|... 236 8e-62
gb|AAF26742.1|AF220539_1 40s ribosomal protein S23 [Euphorbia es... 236 8e-62
ref|NP_195916.1| putative protein; protein id: At5g02960.1, supp... 235 2e-61
dbj|BAB92932.1| 40S ribosomal protein S23 [Oryza sativa (japonic... 233 7e-61
gb|AAF23298.1|AC016661_23 putative 40S ribosomal protein S23 [Ar... 226 9e-59
>sp|P46297|RS23_FRAAN 40S RIBOSOMAL PROTEIN S23 (S12) gi|1362041|pir||S56673 ribosomal
protein S23.e, cytosolic (clone RJ3) - garden strawberry
gi|643074|gb|AAA79921.1| putative 40S ribosomal protein
s12
Length = 142
Score = 236 bits (603), Expect = 8e-62
Identities = 117/117 (100%), Positives = 117/117 (100%)
Frame = -2
Query: 501 SYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP 322
SYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP
Sbjct: 26 SYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP 85
Query: 321 NDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 151
NDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 86 NDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>gb|AAF26742.1|AF220539_1 40s ribosomal protein S23 [Euphorbia esula]
Length = 142
Score = 236 bits (603), Expect = 8e-62
Identities = 117/117 (100%), Positives = 117/117 (100%)
Frame = -2
Query: 501 SYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP 322
SYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP
Sbjct: 26 SYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP 85
Query: 321 NDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 151
NDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 86 NDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>ref|NP_195916.1| putative protein; protein id: At5g02960.1, supported by cDNA:
gi_14532717, supported by cDNA: gi_15450458 [Arabidopsis
thaliana] gi|27735238|sp|P49201|R23B_ARATH 40S ribosomal
protein S23-2 (S12) gi|11276598|pir||T48317 hypothetical
protein F9G14.270 - Arabidopsis thaliana
gi|7413571|emb|CAB86050.1| putative protein [Arabidopsis
thaliana] gi|14532718|gb|AAK64160.1| unknown protein
[Arabidopsis thaliana] gi|15450459|gb|AAK96523.1|
AT5g02960/F9G14_270 [Arabidopsis thaliana]
gi|21281137|gb|AAM44979.1| unknown protein [Arabidopsis
thaliana]
Length = 142
Score = 235 bits (599), Expect = 2e-61
Identities = 116/116 (100%), Positives = 116/116 (100%)
Frame = -2
Query: 498 YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN 319
YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN
Sbjct: 27 YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN 86
Query: 318 DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 151
DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 87 DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>dbj|BAB92932.1| 40S ribosomal protein S23 [Oryza sativa (japonica cultivar-group)]
gi|20805267|dbj|BAB92933.1| 40S ribosomal protein S23
[Oryza sativa (japonica cultivar-group)]
gi|21671347|dbj|BAC02683.1| 40S ribosomal protein [Oryza
sativa (japonica cultivar-group)]
gi|21671348|dbj|BAC02684.1| 40S ribosomal protein [Oryza
sativa (japonica cultivar-group)]
gi|28876025|gb|AAO60034.1| 40S ribosomal protein S23
[Oryza sativa (japonica cultivar-group)]
gi|29124115|gb|AAO65856.1| 40S ribosomal protein S23
[Oryza sativa (japonica cultivar-group)]
Length = 142
Score = 233 bits (595), Expect = 7e-61
Identities = 114/117 (97%), Positives = 117/117 (99%)
Frame = -2
Query: 501 SYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP 322
+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQL+KNGKKIAAFVP
Sbjct: 26 AYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVP 85
Query: 321 NDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 151
NDGCLN+IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 86 NDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>gb|AAF23298.1|AC016661_23 putative 40S ribosomal protein S23 [Arabidopsis thaliana]
Length = 136
Score = 226 bits (577), Expect = 9e-59
Identities = 113/116 (97%), Positives = 114/116 (97%)
Frame = -2
Query: 498 YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN 319
YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN
Sbjct: 21 YKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN 80
Query: 318 DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 151
DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 81 DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,013,631
Number of Sequences: 1393205
Number of extensions: 8168905
Number of successful extensions: 26076
Number of sequences better than 10.0: 373
Number of HSP's better than 10.0 without gapping: 25209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25782
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
