Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013152A_C01 KMC013152A_c01
(464 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum] 54 1e-06
emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum] 52 2e-06
gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit ... 52 4e-06
pir||T51813 ribonucleoside-diphosphate reductase (EC 1.17.4.1) l... 49 3e-05
ref|NP_179770.1| putative ribonucleoside-diphosphate reductase l... 49 3e-05
>emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum]
Length = 808
Score = 53.5 bits (127), Expect = 1e-06
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -1
Query: 461 MQEKPNTECDVDTKMAQVVCSLTNPEECLACGS 363
++EKP T D DTKMAQ+VCSLTN E+CL+CGS
Sbjct: 776 LKEKPKTAVDDDTKMAQMVCSLTNREDCLSCGS 808
>emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum]
Length = 808
Score = 52.4 bits (124), Expect = 2e-06
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = -1
Query: 461 MQEKPNTECDVDTKMAQVVCSLTNPEECLACGS 363
++EKP T D DTKMAQ+VCSL+N +EC+ACGS
Sbjct: 776 LKEKPQTAVDDDTKMAQMVCSLSNRDECMACGS 808
>gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit B [Glycine max]
Length = 808
Score = 51.6 bits (122), Expect = 4e-06
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = -1
Query: 461 MQEKPNTECDVDTKMAQVVCSLTNPEECLACGS 363
++EK N E D +TKMAQ+VCSLTN +ECLACGS
Sbjct: 776 LREKSNVEDDDNTKMAQMVCSLTNRDECLACGS 808
>pir||T51813 ribonucleoside-diphosphate reductase (EC 1.17.4.1) large chain
[imported] - Arabidopsis thaliana
gi|3661603|gb|AAC61773.1| ribonucleoside-diphosphate
reductase large subunit [Arabidopsis thaliana]
Length = 816
Score = 48.9 bits (115), Expect = 3e-05
Identities = 22/31 (70%), Positives = 26/31 (82%)
Frame = -1
Query: 455 EKPNTECDVDTKMAQVVCSLTNPEECLACGS 363
+K E D +TK+AQ+VCSLTNPEECLACGS
Sbjct: 786 DKEVEEEDNETKLAQMVCSLTNPEECLACGS 816
>ref|NP_179770.1| putative ribonucleoside-diphosphate reductase large subunit;
protein id: At2g21790.1, supported by cDNA: gi_14334813,
supported by cDNA: gi_3661602 [Arabidopsis thaliana]
gi|25285837|pir||B84605 hypothetical protein At2g21790
[imported] - Arabidopsis thaliana
gi|4417273|gb|AAD20398.1| putative
ribonucleoside-diphosphate reductase large subunit
[Arabidopsis thaliana] gi|14334814|gb|AAK59585.1|
putative ribonucleoside-diphosphate reductase large
subunit [Arabidopsis thaliana]
Length = 816
Score = 48.9 bits (115), Expect = 3e-05
Identities = 22/31 (70%), Positives = 26/31 (82%)
Frame = -1
Query: 455 EKPNTECDVDTKMAQVVCSLTNPEECLACGS 363
+K E D +TK+AQ+VCSLTNPEECLACGS
Sbjct: 786 DKEVEEEDNETKLAQMVCSLTNPEECLACGS 816
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,466,475
Number of Sequences: 1393205
Number of extensions: 7667670
Number of successful extensions: 14873
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 14285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14870
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
