Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013149A_C01 KMC013149A_c01
(975 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178270.1| unknown protein; protein id: At2g01610.1 [Arabi... 213 5e-54
ref|NP_563960.1| expressed protein; protein id: At1g14890.1, sup... 201 1e-50
ref|NP_173734.1| Unknown protein; protein id: At1g23205.1, suppo... 197 2e-49
gb|AAM63865.1| unknown [Arabidopsis thaliana] 196 5e-49
gb|AAM63352.1| unknown [Arabidopsis thaliana] 181 2e-44
>ref|NP_178270.1| unknown protein; protein id: At2g01610.1 [Arabidopsis thaliana]
gi|25410915|pir||H84426 hypothetical protein At2g01610
[imported] - Arabidopsis thaliana
gi|4220487|gb|AAD12710.1| unknown protein [Arabidopsis
thaliana] gi|20197402|gb|AAM15060.1| unknown protein
[Arabidopsis thaliana]
Length = 222
Score = 213 bits (541), Expect = 5e-54
Identities = 110/190 (57%), Positives = 140/190 (72%), Gaps = 6/190 (3%)
Frame = -3
Query: 895 PATGTDGDADFIRTSCNTTLYPDVCYTSLSRYANAVQQNPGQLARIAIAVTLSKVHRTAS 716
P T T D DFIRTSCN TLYPDVC+TSLS YA+AVQ +P +LA++AI V+LS+ TA+
Sbjct: 34 PNTTTTNDLDFIRTSCNATLYPDVCFTSLSGYASAVQDSPARLAKLAIGVSLSQAKSTAA 93
Query: 715 YLTNLTR-VTDYSAEGSSSLAAQALRDCFSNLDDAVDEIRGSLKQMRQIGAAGAGA---- 551
+L+ L+R YS +G + A+ +RDC SN++DAVDE+RGSL+Q+R + G G
Sbjct: 94 FLSKLSRSAAKYSGDGHQT-ASAVIRDCVSNVEDAVDEMRGSLRQLRDMNGRGGGTAARR 152
Query: 550 GTGSFLFQMSNVQTWMSAALTDEETCTDGFQDVAECP-VKVDVCDRVTKVKKFTSNALAL 374
+F FQMSNVQTWMSAALTDE+TCTDGF+D+ E +K VCDR+ +VK+ TSNALAL
Sbjct: 153 SVETFRFQMSNVQTWMSAALTDEDTCTDGFEDMDEGGLIKTTVCDRLEEVKRLTSNALAL 212
Query: 373 VNRYANKGMP 344
VN YAN G P
Sbjct: 213 VNTYANNGAP 222
>ref|NP_563960.1| expressed protein; protein id: At1g14890.1, supported by cDNA:
33355., supported by cDNA: gi_17529115 [Arabidopsis
thaliana] gi|25402788|pir||F86282 protein F10B6.30
[imported] - Arabidopsis thaliana
gi|8778217|gb|AAF79226.1|AC006917_11 F10B6.30
[Arabidopsis thaliana] gi|17529116|gb|AAL38768.1|
unknown protein [Arabidopsis thaliana]
gi|21592860|gb|AAM64810.1| unknown [Arabidopsis
thaliana] gi|22136710|gb|AAM91674.1| unknown protein
[Arabidopsis thaliana]
Length = 201
Score = 201 bits (512), Expect = 1e-50
Identities = 110/202 (54%), Positives = 137/202 (67%), Gaps = 1/202 (0%)
Frame = -3
Query: 952 LILCLIFSAAAFSNAVDEAPATGTDGDADFIRTSCNTTLYPDVCYTSLSRYANAVQQNPG 773
L +C SA F P T D DFIRTSCNTTLYPDVCYTSL+ YA+AVQ NP
Sbjct: 17 LFICRTISAVRFP------PEQPTTDDLDFIRTSCNTTLYPDVCYTSLAGYASAVQDNPA 70
Query: 772 QLARIAIAVTLSKVHRTASYLTNLTRVTDYSAEGSSSLAAQALRDCFSNLDDAVDEIRGS 593
+LA++AI V+LS+ TA+YL+ L+R A+ A+ DC SN+ DAVD++RGS
Sbjct: 71 RLAKLAIGVSLSRAKYTAAYLSKLSR----------RAASAAVHDCVSNVGDAVDQMRGS 120
Query: 592 LKQMRQIGAAGAGAGTGSFLFQMSNVQTWMSAALTDEETCTDGF-QDVAECPVKVDVCDR 416
L+Q+R++ G +F FQMSNVQTWMSAALTDEETCTDG +++ + K +CDR
Sbjct: 121 LRQLREMN--HRRPGDPAFRFQMSNVQTWMSAALTDEETCTDGVTEEMEDGETKTAICDR 178
Query: 415 VTKVKKFTSNALALVNRYANKG 350
V VK+FTSNALALVN YAN G
Sbjct: 179 VADVKRFTSNALALVNTYANNG 200
>ref|NP_173734.1| Unknown protein; protein id: At1g23205.1, supported by cDNA: 28033.
[Arabidopsis thaliana] gi|25402977|pir||D86366 protein
F26F24.4 [imported] - Arabidopsis thaliana
gi|2829891|gb|AAC00599.1| Unknown protein [Arabidopsis
thaliana] gi|9295716|gb|AAF87022.1|AC005292_31 F26F24.4
[Arabidopsis thaliana]
Length = 205
Score = 197 bits (501), Expect = 2e-49
Identities = 102/178 (57%), Positives = 131/178 (73%), Gaps = 2/178 (1%)
Frame = -3
Query: 874 DADFIRTSCNTTLYPDVCYTSLSRYANAVQQNPGQLARIAIAVTLSKVHRTASYLTNLTR 695
D+DFIRTSCNTTLYPD+C++SLS ++++V +P LAR AI+VTL+K ASYL N+T
Sbjct: 30 DSDFIRTSCNTTLYPDLCFSSLSSFSSSVHNDPALLARAAISVTLTKTLDLASYLANITT 89
Query: 694 VTDYSAEGSSS--LAAQALRDCFSNLDDAVDEIRGSLKQMRQIGAAGAGAGTGSFLFQMS 521
+ S E + AA DCF NL DAV+E++GS+KQMR++ + G+ SF FQMS
Sbjct: 90 LQPESNEDGAHHPTAAAVFHDCFDNLKDAVEEMKGSMKQMRELVSTGS---LESFRFQMS 146
Query: 520 NVQTWMSAALTDEETCTDGFQDVAECPVKVDVCDRVTKVKKFTSNALALVNRYANKGM 347
NVQTW+SAALTDEETCTDGF+D+ + P K D+C RV VKK TSNALALVNR +K +
Sbjct: 147 NVQTWLSAALTDEETCTDGFKDIHDEPRKDDICARVDDVKKMTSNALALVNRCVDKAI 204
>gb|AAM63865.1| unknown [Arabidopsis thaliana]
Length = 205
Score = 196 bits (498), Expect = 5e-49
Identities = 100/178 (56%), Positives = 131/178 (73%), Gaps = 2/178 (1%)
Frame = -3
Query: 874 DADFIRTSCNTTLYPDVCYTSLSRYANAVQQNPGQLARIAIAVTLSKVHRTASYLTNLTR 695
D+DFIRTSCNTTLYPD+C++SLS ++++V +P LAR AI++TL+K ASYL N+T
Sbjct: 30 DSDFIRTSCNTTLYPDLCFSSLSSFSSSVHNDPALLARAAISITLTKTLDLASYLANITT 89
Query: 694 VTDYSAEGSSS--LAAQALRDCFSNLDDAVDEIRGSLKQMRQIGAAGAGAGTGSFLFQMS 521
+ S + + AA DCF NL DAV+E++GS+KQMR++ + G+ SF FQMS
Sbjct: 90 LQPESQDDGAHHPTAAAVFHDCFDNLKDAVEEMKGSMKQMRELVSTGS---LESFRFQMS 146
Query: 520 NVQTWMSAALTDEETCTDGFQDVAECPVKVDVCDRVTKVKKFTSNALALVNRYANKGM 347
NVQTW+SAALTDEETCTDGF+D+ + P K D+C RV VKK TSNALALVNR +K +
Sbjct: 147 NVQTWLSAALTDEETCTDGFKDIHDEPRKDDICARVDDVKKMTSNALALVNRCVDKAI 204
>gb|AAM63352.1| unknown [Arabidopsis thaliana]
Length = 200
Score = 181 bits (459), Expect = 2e-44
Identities = 101/202 (50%), Positives = 137/202 (67%), Gaps = 1/202 (0%)
Frame = -3
Query: 949 ILCLIFSAAAFSNAVDEAPATGTDGDADFIRTSCNTTLYPDVCYTSLSRYANAVQQNPGQ 770
+L L+FS + P ++G +DFIR +CNTTLYPD+C+++LS +AN++Q + +
Sbjct: 9 LLILLFSTFLPQILTVDPPLPPSNG-SDFIRLACNTTLYPDLCFSTLSSFANSIQNDSNR 67
Query: 769 LARIAIAVTLSKVHRTASYLTNLTRVTDYSAEGSSSLAAQALRDCFSNLDDAVDEIRGSL 590
LAR+AI++TL + SYL N Y+ + + + LRDCF NL DAVD +RGS+
Sbjct: 68 LARVAISLTLHNTLQLLSYLQNA-----YNRDHPTPV----LRDCFENLKDAVDGMRGSM 118
Query: 589 KQMRQIGAAGAGAGTGSFLFQMSNVQTWMSAALTDEETCTDGFQDVAE-CPVKVDVCDRV 413
KQM+++ A SF FQMSNV+TW+SAALTDE TCTDGF+DV E +K DVC RV
Sbjct: 119 KQMKEL--VSASGSIESFRFQMSNVKTWLSAALTDEYTCTDGFKDVHEDDSIKDDVCSRV 176
Query: 412 TKVKKFTSNALALVNRYANKGM 347
VKK TSNALALVNRYA++ +
Sbjct: 177 DDVKKLTSNALALVNRYADESI 198
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 900,434,278
Number of Sequences: 1393205
Number of extensions: 23608249
Number of successful extensions: 198963
Number of sequences better than 10.0: 3310
Number of HSP's better than 10.0 without gapping: 109880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168227
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 55742331432
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
