Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013129A_C01 KMC013129A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190204.1| putative protein; protein id: At3g46180.1 [Arab... 100 2e-20
ref|NP_200782.1| protein serine /threonine kinase - like protein... 87 2e-16
dbj|BAB09511.1| UDP-galactose transporter related protein-like [... 87 2e-16
gb|EAA01729.1| agCP12696 [Anopheles gambiae str. PEST] 46 3e-04
gb|AAH44702.1| Similar to RIKEN cDNA 1110003M08 gene [Xenopus la... 45 0.001
>ref|NP_190204.1| putative protein; protein id: At3g46180.1 [Arabidopsis thaliana]
gi|11357381|pir||T49259 hypothetical protein F12M12.150
- Arabidopsis thaliana gi|7799006|emb|CAB90945.1|
putative protein [Arabidopsis thaliana]
Length = 344
Score = 99.8 bits (247), Expect = 2e-20
Identities = 48/76 (63%), Positives = 59/76 (77%)
Frame = -3
Query: 604 ALTFATIMTTRQLVSIMLSCVWFSHPLSWEQWIGAVIVFGSLYAKSFTRKAPQKTTSSDS 425
ALTFA IMTTRQL SIMLSC+WFSHPLSWEQ IG+VIVFGSLYAK+F +K +K ++
Sbjct: 271 ALTFAAIMTTRQLASIMLSCIWFSHPLSWEQCIGSVIVFGSLYAKTFVKKKSEKPPAAQE 330
Query: 424 IPLVQSGDSNNLKDNP 377
+P + ++ LK NP
Sbjct: 331 LP--RDEEAQPLKGNP 344
>ref|NP_200782.1| protein serine /threonine kinase - like protein; protein id:
At5g59740.1 [Arabidopsis thaliana]
Length = 344
Score = 87.0 bits (214), Expect = 2e-16
Identities = 44/72 (61%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Frame = -3
Query: 604 ALTFATIMTTRQLVSIMLSCVWFSHPLSWEQWIGAVIVFGSLYAKSF--TRKAPQKTTSS 431
ALTFA IMTTRQL SIMLSC+WFSHPLSWEQ IG+VIVFGSLYAK+ +K Q
Sbjct: 273 ALTFAAIMTTRQLASIMLSCIWFSHPLSWEQCIGSVIVFGSLYAKNLLNNKKNSQTQPPP 332
Query: 430 DSIPLVQSGDSN 395
+P + +S+
Sbjct: 333 PELPQYEKVESS 344
>dbj|BAB09511.1| UDP-galactose transporter related protein-like [Arabidopsis
thaliana]
Length = 345
Score = 87.0 bits (214), Expect = 2e-16
Identities = 44/72 (61%), Positives = 52/72 (72%), Gaps = 2/72 (2%)
Frame = -3
Query: 604 ALTFATIMTTRQLVSIMLSCVWFSHPLSWEQWIGAVIVFGSLYAKSF--TRKAPQKTTSS 431
ALTFA IMTTRQL SIMLSC+WFSHPLSWEQ IG+VIVFGSLYAK+ +K Q
Sbjct: 274 ALTFAAIMTTRQLASIMLSCIWFSHPLSWEQCIGSVIVFGSLYAKNLLNNKKNSQTQPPP 333
Query: 430 DSIPLVQSGDSN 395
+P + +S+
Sbjct: 334 PELPQYEKVESS 345
>gb|EAA01729.1| agCP12696 [Anopheles gambiae str. PEST]
Length = 338
Score = 46.2 bits (108), Expect = 3e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = -3
Query: 604 ALTFATIMTTRQLVSIMLSCVWFSHPLSWEQWIGAVIVFGSLYAKSFTRKAP 449
AL + + TTR+ +++ S ++F + LS QW+GAV+VF L+A F + P
Sbjct: 264 ALACSVVTTTRKFFTVLFSVLFFGNALSGRQWVGAVLVFCGLFADMFFGRKP 315
>gb|AAH44702.1| Similar to RIKEN cDNA 1110003M08 gene [Xenopus laevis]
Length = 439
Score = 44.7 bits (104), Expect = 0.001
Identities = 23/66 (34%), Positives = 39/66 (58%), Gaps = 1/66 (1%)
Frame = -3
Query: 604 ALTFATIMTTRQLVSIMLSCVWFSHPLSWEQWIGAVIVFGSLYAKSFTR-KAPQKTTSSD 428
A F IMT RQ ++I+LSC+ + HP++ +G VF +L+ + + R + +K +
Sbjct: 372 AAVFTIIMTLRQALAILLSCLLYGHPVTAVGGVGVATVFLALFLRVYARGRMRKKGRKAA 431
Query: 427 SIPLVQ 410
IP+VQ
Sbjct: 432 DIPVVQ 437
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,731,896
Number of Sequences: 1393205
Number of extensions: 13582139
Number of successful extensions: 31541
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 30330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31531
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
