>KMC013125A_C01 KMC013125A_c01
gccccccttacagctatacactgcacattgaaaaagaaagctaaagcttccaatctctag
agagagagaataaaaaaaccATTTTTTTTCTACTGTTACACTCTCTTTCTGTCGGTCAAT
TCGATCCAAATCTCTTTTATTTAGTTCTGAATCTTGTTTCATTGTCTCATTACTTCACTT
GGGATTCATTGCTCAATTGGGTTCTGTCTCTTTCCTTCACTTTCCCTTGTTGGGGTGTTT
TGATCCAGCTCCTGGCTTCATTGCCCACAGAATTTCATTGATGAATCTCATTTGGTGACA
AAGCAAGGATTTTTGAGCTCTTATGCAGATCCAGATTTCAATTGTAGTATAAAGGAGCTG
GTTCTGGAGTGGGACTAGGAGTGGATAAGAAGAAAGGAATAAGAAAGTGCATGAGGGTTT
AAATTAATGTGTGGATCTTGTTGAGCTTGAAGTACCACTTGTTCCATTTTATTGGAATCT
GGACAGAGCTAAGTTGGAGCTTATGATGGAGTCAGATGGGGAAGCTGGGGAAAAGTCAAT
GAAGGCATTGGGTGGCAAAGTCTGCCAGATATGCGGCGATAACGTCGGGAACACTGTGAG
TGGTGAACCATTCATTGCTTGCGATGTCTGC

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC013125A_C01 KMC013125A_c01
         (631 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD39534.2| cellulose synthase catalytic subunit [Gossypium h...    67  2e-10
gb|AAO41140.1| cellulose synthase [Oryza sativa (japonica cultiv...    58  9e-08
ref|NP_196136.1| cellulose synthase catalytic subunit (gb|AAC393...    58  9e-08
pir||T52054 cellulose synthase (EC 2.4.1.-) catalytic subunit [v...    58  9e-08
gb|AAF89964.1|AF200528_1 cellulose synthase-4 [Zea mays]               54  2e-06

>gb|AAD39534.2| cellulose synthase catalytic subunit [Gossypium hirsutum]
          Length = 1067

 Score = 67.0 bits (162), Expect = 2e-10
 Identities = 27/42 (64%), Positives = 33/42 (78%)
 Frame = +2

Query: 506 MESDGEAGEKSMKALGGKVCQICGDNVGNTVSGEPFIACDVC 631
           MES+G+ G K MK LGG+ CQICGDNVG    G+PFIAC++C
Sbjct: 1   MESEGDIGGKPMKNLGGQTCQICGDNVGKNTDGDPFIACNIC 42

>gb|AAO41140.1| cellulose synthase [Oryza sativa (japonica cultivar-group)]
          Length = 1092

 Score = 58.2 bits (139), Expect = 9e-08
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = +2

Query: 500 LMMESDGEAGEKSMKALGGKVCQICGDNVGNTVSGEPFIACDVC 631
           +++  DGE G K +K   G+VCQICGD+VG T  GEPF+AC+ C
Sbjct: 18  VVIRRDGEPGPKPVKHTNGQVCQICGDDVGLTPDGEPFVACNEC 61

>ref|NP_196136.1| cellulose synthase catalytic subunit (gb|AAC39336.1); protein id:
           At5g05170.1, supported by cDNA: gi_2827142 [Arabidopsis
           thaliana] gi|9759258|dbj|BAB09693.1| cellulose synthase
           catalytic subunit [Arabidopsis thaliana]
           gi|26983832|gb|AAN86168.1| putative cellulose synthase
           catalytic subunit [Arabidopsis thaliana]
          Length = 1065

 Score = 58.2 bits (139), Expect = 9e-08
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +2

Query: 506 MESDGEAGEKSMKALGGKVCQICGDNVGNTVSGEPFIACDVC 631
           MES+GE   K MK +  + CQIC DNVG TV G+ F+ACD+C
Sbjct: 1   MESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDIC 42

>pir||T52054 cellulose synthase (EC 2.4.1.-) catalytic subunit [validated] -
           Arabidopsis thaliana gi|2827143|gb|AAC39336.1| cellulose
           synthase catalytic subunit [Arabidopsis thaliana]
          Length = 1065

 Score = 58.2 bits (139), Expect = 9e-08
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +2

Query: 506 MESDGEAGEKSMKALGGKVCQICGDNVGNTVSGEPFIACDVC 631
           MES+GE   K MK +  + CQIC DNVG TV G+ F+ACD+C
Sbjct: 1   MESEGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDIC 42

>gb|AAF89964.1|AF200528_1 cellulose synthase-4 [Zea mays]
          Length = 1077

 Score = 53.5 bits (127), Expect = 2e-06
 Identities = 25/42 (59%), Positives = 29/42 (68%)
 Frame = +2

Query: 506 MESDGEAGEKSMKALGGKVCQICGDNVGNTVSGEPFIACDVC 631
           ME D + G KS +  GG+VCQICGD VG T  G+ F ACDVC
Sbjct: 1   MEGDAD-GVKSGRRGGGQVCQICGDGVGTTAEGDVFAACDVC 41

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,614,987
Number of Sequences: 1393205
Number of extensions: 12832024
Number of successful extensions: 40969
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 37084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40826
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 SPDL087c05_f BP057447 1 481 2 MPDL019a08_f AV777438 222 631

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