Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013121A_C01 KMC013121A_c01
(653 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52134 Zwille protein [imported] - Arabidopsis thaliana gi|... 128 8e-29
ref|NP_199194.1| PINHEAD (gb|AAD40098.1); translation initiation... 128 8e-29
gb|AAF79718.1|AC020889_26 T1N15.2 [Arabidopsis thaliana] 110 2e-23
ref|NP_175274.1| leaf development protein Argonaute; protein id:... 110 2e-23
dbj|BAB96813.1| ZLL/PNH homologous protein [Oryza sativa (japoni... 107 1e-22
>pir||T52134 Zwille protein [imported] - Arabidopsis thaliana
gi|2959781|emb|CAA11429.1| Zwille protein [Arabidopsis
thaliana]
Length = 988
Score = 128 bits (321), Expect = 8e-29
Identities = 66/91 (72%), Positives = 71/91 (77%)
Frame = -3
Query: 651 FTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYAGPEELQENGSTGYWTW 472
FTADGIQSLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFY PE +Q+NGS G
Sbjct: 902 FTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGSPGK--- 958
Query: 471 FQR*QRAAGECGVKPFASLGKENVKRVMFYC 379
G+ GVKP +L KENVKRVMFYC
Sbjct: 959 KNTKTTTVGDVGVKPLPAL-KENVKRVMFYC 988
>ref|NP_199194.1| PINHEAD (gb|AAD40098.1); translation initiation factor; protein id:
At5g43810.1 [Arabidopsis thaliana]
gi|12643935|sp|Q9XGW1|PINH_ARATH PINHEAD protein (ZWILLE
protein) gi|5107374|gb|AAD40098.1|AF154272_1 PINHEAD
[Arabidopsis thaliana] gi|10177951|dbj|BAB11310.1|
PINHEAD [Arabidopsis thaliana]
Length = 988
Score = 128 bits (321), Expect = 8e-29
Identities = 66/91 (72%), Positives = 71/91 (77%)
Frame = -3
Query: 651 FTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYAGPEELQENGSTGYWTW 472
FTADGIQSLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFY PE +Q+NGS G
Sbjct: 902 FTADGIQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGSPGK--- 958
Query: 471 FQR*QRAAGECGVKPFASLGKENVKRVMFYC 379
G+ GVKP +L KENVKRVMFYC
Sbjct: 959 KNTKTTTVGDVGVKPLPAL-KENVKRVMFYC 988
>gb|AAF79718.1|AC020889_26 T1N15.2 [Arabidopsis thaliana]
Length = 1123
Score = 110 bits (274), Expect = 2e-23
Identities = 62/102 (60%), Positives = 69/102 (66%), Gaps = 11/102 (10%)
Frame = -3
Query: 651 FTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYAGPEELQENGSTGYWTW 472
FTADG+QSLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFY P E ++GS +
Sbjct: 1028 FTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP-ETSDSGSMASGSM 1086
Query: 471 FQR*QRAAGECG-----------VKPFASLGKENVKRVMFYC 379
R G G V+P +L KENVKRVMFYC
Sbjct: 1087 ----ARGGGMAGRSTRGPNVNAAVRPLPAL-KENVKRVMFYC 1123
>ref|NP_175274.1| leaf development protein Argonaute; protein id: At1g48410.1,
supported by cDNA: gi_2149639 [Arabidopsis thaliana]
gi|11386626|sp|O04379|AGO1_ARATH Argonaute protein
gi|2149640|gb|AAC18440.1| Argonaute protein [Arabidopsis
thaliana] gi|5733867|gb|AAD49755.1|AC007932_3 Identical
to Argonaute protein from Arabidopsis thaliana gb|U91995.
EST gb|AA720232 comes from this gene
gi|24030354|gb|AAN41341.1| putative leaf development
protein Argonaute [Arabidopsis thaliana]
Length = 1048
Score = 110 bits (274), Expect = 2e-23
Identities = 62/102 (60%), Positives = 69/102 (66%), Gaps = 11/102 (10%)
Frame = -3
Query: 651 FTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYAGPEELQENGSTGYWTW 472
FTADG+QSLTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFY P E ++GS +
Sbjct: 953 FTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP-ETSDSGSMASGSM 1011
Query: 471 FQR*QRAAGECG-----------VKPFASLGKENVKRVMFYC 379
R G G V+P +L KENVKRVMFYC
Sbjct: 1012 ----ARGGGMAGRSTRGPNVNAAVRPLPAL-KENVKRVMFYC 1048
>dbj|BAB96813.1| ZLL/PNH homologous protein [Oryza sativa (japonica cultivar-group)]
Length = 978
Score = 107 bits (267), Expect = 1e-22
Identities = 58/91 (63%), Positives = 65/91 (70%)
Frame = -3
Query: 651 FTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYAGPEELQENGSTGYWTW 472
FTAD +Q+LTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFY P E+ EN +T
Sbjct: 896 FTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEP-EMSENQTT----- 949
Query: 471 FQR*QRAAGECGVKPFASLGKENVKRVMFYC 379
+ VKP ++ KE VKRVMFYC
Sbjct: 950 -SKSSTGTNGTSVKPLPAV-KEKVKRVMFYC 978
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,941,397
Number of Sequences: 1393205
Number of extensions: 13422420
Number of successful extensions: 40779
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 38912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40710
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
