Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013115A_C01 KMC013115A_c01
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201416.1| glycosyl hydrolase family 38 (alpha-mannosidase... 315 2e-85
gb|AAL73068.1|AC090873_14 Putative alpha-mannosidase [Oryza sati... 301 6e-81
ref|NP_189306.1| glycosyl hydrolase family 38 (alpha-mannosidase... 289 2e-77
ref|NP_196902.2| glycosyl hydrolase family 38 (alpha-mannosidase... 286 2e-76
dbj|BAB11126.1| alpha-mannosidase [Arabidopsis thaliana] 286 2e-76
>ref|NP_201416.1| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At5g66150.1 [Arabidopsis thaliana]
gi|10177130|dbj|BAB10420.1| alpha-mannosidase
[Arabidopsis thaliana]
Length = 1047
Score = 315 bits (808), Expect = 2e-85
Identities = 150/195 (76%), Positives = 161/195 (81%)
Frame = +1
Query: 43 LLLLCFYSSLVSANYIKYNTGASAVQGKLNVHLVPHSHDDVGWLKTVDQYFVGSNNSIQG 222
LLLL S+ Y+KY T A V GKLNVHLVPHSHDDVGWLKTVDQY+VGSNN IQ
Sbjct: 19 LLLLSLVESVKGGGYVKYGTEAKVVPGKLNVHLVPHSHDDVGWLKTVDQYYVGSNNRIQN 78
Query: 223 TSIENVLDSVVASLQKDPNRKFVFAEMAFFHRWWVEQSPETQEQVKKLVNAGQLEFVNGG 402
+ NVLDSVV SL +DPNRKFVFAEMAFF RWW EQSPE QEQV++LV +GQLEFVNGG
Sbjct: 79 ACVRNVLDSVVDSLLRDPNRKFVFAEMAFFTRWWEEQSPERQEQVRRLVKSGQLEFVNGG 138
Query: 403 WCMHDEAATHYIDMIDQTTLGHRFIKDQFNIIPRAAWQIDPFGHSAVQGYLLGAEIGFDS 582
W M+DEA HYIDMIDQTT GHRFIK QFN PRAAWQIDPFGHS+VQ YLLGAE+G DS
Sbjct: 139 WAMNDEATCHYIDMIDQTTKGHRFIKQQFNTTPRAAWQIDPFGHSSVQAYLLGAELGLDS 198
Query: 583 VHFARIDYQDRAKRK 627
VHFARIDYQDR KRK
Sbjct: 199 VHFARIDYQDREKRK 213
>gb|AAL73068.1|AC090873_14 Putative alpha-mannosidase [Oryza sativa]
gi|19919970|gb|AAM08418.1|AC112513_4 Putative
alpha-mannosidase [Oryza sativa]
Length = 640
Score = 301 bits (770), Expect = 6e-81
Identities = 150/214 (70%), Positives = 166/214 (77%), Gaps = 13/214 (6%)
Frame = +1
Query: 25 AESLSVLLLLCFYSSLVSAN--YIKYNTGASAVQGKLNVHLVPHSHDDVGWLKTVDQYFV 198
A S S L+++ +L A + YNT A AV GKLNVHLVPHSHDDVGWLKT+DQYFV
Sbjct: 2 ASSSSALVVVVAVLALAEAAVAFSGYNTSAGAVAGKLNVHLVPHSHDDVGWLKTIDQYFV 61
Query: 199 GSNNSIQGTSIENVLDSVVASLQKDPNRKFVFAEMAFFHRWWVEQSPETQEQVKKLVNAG 378
G+NNSIQG + N LDSVV +L DP RKFVFAE AFF RWW E+SP+ Q V KLV++G
Sbjct: 62 GTNNSIQGACVMNTLDSVVDALILDPARKFVFAEQAFFQRWWAEKSPKIQAIVHKLVDSG 121
Query: 379 QLEFV-----------NGGWCMHDEAATHYIDMIDQTTLGHRFIKDQFNIIPRAAWQIDP 525
QLEF+ NGGWCMHDEAA HYIDMIDQTTLGHR IK QFN IPRA WQIDP
Sbjct: 122 QLEFISLRKFGNFKFRNGGWCMHDEAAVHYIDMIDQTTLGHRVIKKQFNKIPRAGWQIDP 181
Query: 526 FGHSAVQGYLLGAEIGFDSVHFARIDYQDRAKRK 627
FGHSAVQGYLLGAE+GFDS+HFARIDYQDRAKRK
Sbjct: 182 FGHSAVQGYLLGAELGFDSMHFARIDYQDRAKRK 215
>ref|NP_189306.1| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At3g26720.1, supported by cDNA: gi_14517402 [Arabidopsis
thaliana] gi|1888357|emb|CAA66821.1| alpha-mannosidase
[Arabidopsis thaliana] gi|1890154|emb|CAA72432.1|
alpha-mannosidase precursor [Arabidopsis thaliana]
gi|11994305|dbj|BAB01735.1| alpha-mannosidase
[Arabidopsis thaliana] gi|14517403|gb|AAK62592.1|
AT3g26720/MLJ15_12 [Arabidopsis thaliana]
gi|21360397|gb|AAM47314.1| AT3g26720/MLJ15_12
[Arabidopsis thaliana]
Length = 1019
Score = 289 bits (739), Expect = 2e-77
Identities = 135/194 (69%), Positives = 157/194 (80%)
Frame = +1
Query: 43 LLLLCFYSSLVSANYIKYNTGASAVQGKLNVHLVPHSHDDVGWLKTVDQYFVGSNNSIQG 222
L+L V++ YI+YNT V K+NVHLVPHSHDDVGWLKTVDQY+VGSNNSI+G
Sbjct: 10 LILAAIVIGGVTSEYIEYNTKPRIVPEKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIRG 69
Query: 223 TSIENVLDSVVASLQKDPNRKFVFAEMAFFHRWWVEQSPETQEQVKKLVNAGQLEFVNGG 402
++NVLDSV+ASL D NRKF++ EMAFF RWW +QS + +VKKLV++GQLEF+NGG
Sbjct: 70 ACVQNVLDSVIASLLDDENRKFIYVEMAFFQRWWRQQSNAKKVKVKKLVDSGQLEFINGG 129
Query: 403 WCMHDEAATHYIDMIDQTTLGHRFIKDQFNIIPRAAWQIDPFGHSAVQGYLLGAEIGFDS 582
CMHDEA HYIDMIDQTTLGH+FIK +F +PR WQIDPFGHSAVQ YLLGAE GFDS
Sbjct: 130 MCMHDEATPHYIDMIDQTTLGHQFIKTEFGQVPRVGWQIDPFGHSAVQAYLLGAEFGFDS 189
Query: 583 VHFARIDYQDRAKR 624
+ FARIDYQDRAKR
Sbjct: 190 LFFARIDYQDRAKR 203
>ref|NP_196902.2| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At5g13980.1, supported by cDNA: gi_20466475 [Arabidopsis
thaliana] gi|20466476|gb|AAM20555.1| alpha-mannosidase
[Arabidopsis thaliana] gi|23198186|gb|AAN15620.1|
alpha-mannosidase [Arabidopsis thaliana]
Length = 1024
Score = 286 bits (731), Expect = 2e-76
Identities = 133/193 (68%), Positives = 155/193 (79%)
Frame = +1
Query: 46 LLLCFYSSLVSANYIKYNTGASAVQGKLNVHLVPHSHDDVGWLKTVDQYFVGSNNSIQGT 225
++L SLV + Y+ YNT + V GKLNVH+VPHSHDDVGWLKTVDQY+VGSNNSIQ
Sbjct: 10 IVLLLGISLVESRYMVYNTSHTIVPGKLNVHVVPHSHDDVGWLKTVDQYYVGSNNSIQVA 69
Query: 226 SIENVLDSVVASLQKDPNRKFVFAEMAFFHRWWVEQSPETQEQVKKLVNAGQLEFVNGGW 405
++NVLDS+V +L D NRKF++ E AFF RWW EQS E + VK+L+++GQLE +NGG
Sbjct: 70 CVQNVLDSIVPALLADKNRKFIYVEQAFFQRWWNEQSEEIKRIVKELIHSGQLELINGGM 129
Query: 406 CMHDEAATHYIDMIDQTTLGHRFIKDQFNIIPRAAWQIDPFGHSAVQGYLLGAEIGFDSV 585
CMHDEAA HYIDMIDQTTLGHRFI +FN+ PR WQIDPFGHSAVQ YLLGAE+GFDSV
Sbjct: 130 CMHDEAAPHYIDMIDQTTLGHRFIIREFNVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSV 189
Query: 586 HFARIDYQDRAKR 624
F RIDYQDR KR
Sbjct: 190 FFGRIDYQDREKR 202
>dbj|BAB11126.1| alpha-mannosidase [Arabidopsis thaliana]
Length = 1030
Score = 286 bits (731), Expect = 2e-76
Identities = 133/193 (68%), Positives = 155/193 (79%)
Frame = +1
Query: 46 LLLCFYSSLVSANYIKYNTGASAVQGKLNVHLVPHSHDDVGWLKTVDQYFVGSNNSIQGT 225
++L SLV + Y+ YNT + V GKLNVH+VPHSHDDVGWLKTVDQY+VGSNNSIQ
Sbjct: 10 IVLLLGISLVESRYMVYNTSHTIVPGKLNVHVVPHSHDDVGWLKTVDQYYVGSNNSIQVA 69
Query: 226 SIENVLDSVVASLQKDPNRKFVFAEMAFFHRWWVEQSPETQEQVKKLVNAGQLEFVNGGW 405
++NVLDS+V +L D NRKF++ E AFF RWW EQS E + VK+L+++GQLE +NGG
Sbjct: 70 CVQNVLDSIVPALLADKNRKFIYVEQAFFQRWWNEQSEEIKRIVKELIHSGQLELINGGM 129
Query: 406 CMHDEAATHYIDMIDQTTLGHRFIKDQFNIIPRAAWQIDPFGHSAVQGYLLGAEIGFDSV 585
CMHDEAA HYIDMIDQTTLGHRFI +FN+ PR WQIDPFGHSAVQ YLLGAE+GFDSV
Sbjct: 130 CMHDEAAPHYIDMIDQTTLGHRFIIREFNVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSV 189
Query: 586 HFARIDYQDRAKR 624
F RIDYQDR KR
Sbjct: 190 FFGRIDYQDREKR 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,582,644
Number of Sequences: 1393205
Number of extensions: 11913596
Number of successful extensions: 31547
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 30011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31392
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
