Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013112A_C01 KMC013112A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197933.1| AtBgamma - like protein; protein id: At5g25510.... 149 3e-35
emb|CAC85920.1| protein phosphatase 2A B'kappa subunit [Oryza sa... 129 3e-29
emb|CAB76153.1| putative B' regulatory subunit of PP2A [Oryza sa... 129 3e-29
ref|NP_188802.1| B regulatory subunit of PP2A, putative; protein... 103 2e-21
dbj|BAB02360.1| protein phosphatase 2A B' regulatory subunit [Ar... 103 2e-21
>ref|NP_197933.1| AtBgamma - like protein; protein id: At5g25510.1, supported by
cDNA: gi_16604606 [Arabidopsis thaliana]
gi|16604607|gb|AAL24096.1| putative AtBgamma protein
[Arabidopsis thaliana] gi|23296589|gb|AAN13126.1|
putative AtBgamma protein [Arabidopsis thaliana]
Length = 500
Score = 149 bits (375), Expect = 3e-35
Identities = 70/102 (68%), Positives = 83/102 (80%)
Frame = -2
Query: 573 NNDHIVNLIAHNRQVILPIILPALERNSQNHWNPAVFNLTHNVRKMFMEMDEKLFLSCHS 394
NND IVNLI HNRQ ILPI+ ALE+N+QNHWN +V NLT NVRKMF EMDE LF+SCH+
Sbjct: 392 NNDQIVNLIGHNRQAILPIMFTALEKNAQNHWNQSVLNLTLNVRKMFCEMDEALFMSCHA 451
Query: 393 QFKEEEEMLNSEAEKRKEAWKQLEHAASLKPVVGNTAVLVSP 268
+FKE+E S AEKRKE W +LE+AAS+KP+ G TAVLV+P
Sbjct: 452 RFKEDEAKQCSAAEKRKEVWARLENAASMKPITGKTAVLVTP 493
>emb|CAC85920.1| protein phosphatase 2A B'kappa subunit [Oryza sativa (japonica
cultivar-group)]
Length = 510
Score = 129 bits (323), Expect = 3e-29
Identities = 61/100 (61%), Positives = 79/100 (79%)
Frame = -2
Query: 573 NNDHIVNLIAHNRQVILPIILPALERNSQNHWNPAVFNLTHNVRKMFMEMDEKLFLSCHS 394
NND++++LIA NRQ+I+PII+PALE NSQNHWN AV NLT NV+KMF EMD+ LF +C
Sbjct: 398 NNDNVISLIAQNRQMIMPIIVPALEHNSQNHWNQAVLNLTDNVKKMFSEMDDVLFSACLV 457
Query: 393 QFKEEEEMLNSEAEKRKEAWKQLEHAASLKPVVGNTAVLV 274
++KE+EE S KR+ W++LE AAS +PV G+TAVLV
Sbjct: 458 KYKEDEERQASLESKRRLTWEKLESAASFQPVTGHTAVLV 497
>emb|CAB76153.1| putative B' regulatory subunit of PP2A [Oryza sativa]
Length = 143
Score = 129 bits (323), Expect = 3e-29
Identities = 61/100 (61%), Positives = 79/100 (79%)
Frame = -2
Query: 573 NNDHIVNLIAHNRQVILPIILPALERNSQNHWNPAVFNLTHNVRKMFMEMDEKLFLSCHS 394
NND++++LIA NRQ+I+PII+PALE NSQNHWN AV NLT NV+KMF EMD+ LF +C
Sbjct: 31 NNDNVISLIAQNRQMIMPIIVPALEHNSQNHWNQAVLNLTDNVKKMFSEMDDVLFSACLV 90
Query: 393 QFKEEEEMLNSEAEKRKEAWKQLEHAASLKPVVGNTAVLV 274
++KE+EE S KR+ W++LE AAS +PV G+TAVLV
Sbjct: 91 KYKEDEERQASLESKRRLTWEKLESAASFQPVTGHTAVLV 130
>ref|NP_188802.1| B regulatory subunit of PP2A, putative; protein id: At3g21650.1
[Arabidopsis thaliana]
Length = 546
Score = 103 bits (257), Expect = 2e-21
Identities = 52/100 (52%), Positives = 68/100 (68%)
Frame = -2
Query: 573 NNDHIVNLIAHNRQVILPIILPALERNSQNHWNPAVFNLTHNVRKMFMEMDEKLFLSCHS 394
NNDHI NLI N +VI+PI+ PALERN++ HWN AV +LT NVRK+ E+D+ LF C +
Sbjct: 428 NNDHIRNLITQNHKVIMPIVFPALERNTRGHWNQAVQSLTINVRKVLCEIDQVLFDECLA 487
Query: 393 QFKEEEEMLNSEAEKRKEAWKQLEHAASLKPVVGNTAVLV 274
+F+ EE KR+ W++LE A+ K VV N AVLV
Sbjct: 488 KFQVEEVNKTEVKAKRERTWQRLEDLATSKTVVTNEAVLV 527
>dbj|BAB02360.1| protein phosphatase 2A B' regulatory subunit [Arabidopsis thaliana]
Length = 518
Score = 103 bits (257), Expect = 2e-21
Identities = 52/100 (52%), Positives = 68/100 (68%)
Frame = -2
Query: 573 NNDHIVNLIAHNRQVILPIILPALERNSQNHWNPAVFNLTHNVRKMFMEMDEKLFLSCHS 394
NNDHI NLI N +VI+PI+ PALERN++ HWN AV +LT NVRK+ E+D+ LF C +
Sbjct: 400 NNDHIRNLITQNHKVIMPIVFPALERNTRGHWNQAVQSLTINVRKVLCEIDQVLFDECLA 459
Query: 393 QFKEEEEMLNSEAEKRKEAWKQLEHAASLKPVVGNTAVLV 274
+F+ EE KR+ W++LE A+ K VV N AVLV
Sbjct: 460 KFQVEEVNKTEVKAKRERTWQRLEDLATSKTVVTNEAVLV 499
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,781,036
Number of Sequences: 1393205
Number of extensions: 10095199
Number of successful extensions: 29988
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 29100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29967
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
