Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013100A_C01 KMC013100A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC55626.1| OJ1081_B12.7 [Oryza sativa (japonica cultivar-gr... 59 5e-08
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 59 7e-08
gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Ho... 58 9e-08
gb|AAL86510.1|AC099040_14 putative retrotransposon protein [Oryz... 58 9e-08
gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor] 57 1e-07
>dbj|BAC55626.1| OJ1081_B12.7 [Oryza sativa (japonica cultivar-group)]
Length = 1441
Score = 58.9 bits (141), Expect = 5e-08
Identities = 41/86 (47%), Positives = 44/86 (50%), Gaps = 4/86 (4%)
Frame = +2
Query: 323 LTSPQISFSVNKVC*FLSESLEEHGTAVKCILNVT*KAL*TMGFFIQTNF----PAFSDA 490
LT P ISFSVNKVC FL H AVK IL L +G I +F AFSDA
Sbjct: 1228 LTRPDISFSVNKVCQFLQNPTIVHWAAVKRILRYLQGTL-GLGLKIDKSFSYIVSAFSDA 1286
Query: 491 DWASNVDDRRSTFWEIVFTLGPKFRW 568
DWA +DDRRST VF W
Sbjct: 1287 DWAGCLDDRRSTGGFAVFLGSNLISW 1312
Score = 32.0 bits (71), Expect(2) = 0.002
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 65 YTETVSPVVKPVTVRILLSLAV 130
Y +T SPVVK T+R++LSLAV
Sbjct: 1003 YEDTFSPVVKAATIRLVLSLAV 1024
Score = 30.8 bits (68), Expect(2) = 0.002
Identities = 13/17 (76%), Positives = 16/17 (93%)
Frame = +1
Query: 1 GSINKYKARLVAKGFHQ 51
G+I++YKARLVAKGF Q
Sbjct: 981 GTIDRYKARLVAKGFKQ 997
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 58.5 bits (140), Expect = 7e-08
Identities = 39/78 (50%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Frame = +2
Query: 323 LTSPQISFSVNKVC*FLSESLEEHGTAVKCILNVT*KAL*TMGFFI----QTNFPAFSDA 490
LT P I+FSVNKVC FL H AVK IL K +G I T AFSDA
Sbjct: 1107 LTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYI-KQCTNLGLHIHRSDSTLVSAFSDA 1165
Query: 491 DWASNVDDRRSTFWEIVF 544
DWA +VDDR+ST VF
Sbjct: 1166 DWAGSVDDRKSTGGFAVF 1183
Score = 35.0 bits (79), Expect(2) = 4e-04
Identities = 22/48 (45%), Positives = 28/48 (57%)
Frame = +2
Query: 62 DYTETVSPVVKPVTVRILLSLAVMITSLIT*LCYLITINKRCHTYLQD 205
DY +T SPVVK T+RI+LS+AV S LC L N H L++
Sbjct: 881 DYDDTFSPVVKHATIRIILSIAV---SRGWSLCQLDVQNAFLHGVLEE 925
Score = 30.0 bits (66), Expect(2) = 4e-04
Identities = 12/17 (70%), Positives = 16/17 (93%)
Frame = +1
Query: 1 GSINKYKARLVAKGFHQ 51
GS+++YKARLVAKG+ Q
Sbjct: 860 GSLDRYKARLVAKGYKQ 876
>gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1150
Score = 58.2 bits (139), Expect = 9e-08
Identities = 39/86 (45%), Positives = 45/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 323 LTSPQISFSVNKVC*FLSESLEEHGTAVKCILNVT*KAL*TMGFFIQTN----FPAFSDA 490
LT P I+FS+NKVC FL H +AVK I+ + MG IQ + AFSDA
Sbjct: 858 LTRPDIAFSINKVCQFLHSPTLTHWSAVKRIIRYL-RGTVGMGLKIQKSQSMLVNAFSDA 916
Query: 491 DWASNVDDRRSTFWEIVFTLGPKFRW 568
DWA VDDRRST VF W
Sbjct: 917 DWAGCVDDRRSTSGFAVFLGSNLISW 942
Score = 32.3 bits (72), Expect = 5.1
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = +2
Query: 62 DYTETVSPVVKPVTVRILLSLAV 130
DY +T SPVVK T+R +LS+AV
Sbjct: 631 DYEDTFSPVVKATTIRTVLSIAV 653
>gb|AAL86510.1|AC099040_14 putative retrotransposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 1139
Score = 58.2 bits (139), Expect = 9e-08
Identities = 39/86 (45%), Positives = 45/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 323 LTSPQISFSVNKVC*FLSESLEEHGTAVKCILNVT*KAL*TMGFFIQTN----FPAFSDA 490
LT P I+FS+NKVC FL H +AVK I+ + MG IQ + AFSDA
Sbjct: 826 LTRPDIAFSINKVCQFLHSPTLTHWSAVKRIIRYL-RGTVGMGLKIQKSQSMLVNAFSDA 884
Query: 491 DWASNVDDRRSTFWEIVFTLGPKFRW 568
DWA VDDRRST VF W
Sbjct: 885 DWAGCVDDRRSTSGFAVFLGSNLISW 910
Score = 32.3 bits (72), Expect = 5.1
Identities = 14/23 (60%), Positives = 18/23 (77%)
Frame = +2
Query: 62 DYTETVSPVVKPVTVRILLSLAV 130
DY +T SPVVK T+R +LS+AV
Sbjct: 599 DYEDTFSPVVKATTIRTVLSIAV 621
>gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor]
Length = 1012
Score = 57.4 bits (137), Expect = 1e-07
Identities = 43/106 (40%), Positives = 49/106 (45%), Gaps = 4/106 (3%)
Frame = +2
Query: 263 YCGPIITLLYLQPAEEDPDPLTSPQISFSVNKVC*FLSESLEEHGTAVKCILNVT*KAL* 442
YC + L YL LT P ISF+VNKVC FL H +AVK IL K
Sbjct: 794 YCSVVGALQYLT--------LTRPDISFAVNKVCQFLHSPTTIHWSAVKRILRYI-KGTT 844
Query: 443 TMGFFIQTN----FPAFSDADWASNVDDRRSTFWEIVFTLGPKFRW 568
+G + AF+DADWA VDDRRST VF W
Sbjct: 845 KLGIKFSKSESMLVSAFADADWAGCVDDRRSTGGFAVFLGNNLISW 890
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,500,297
Number of Sequences: 1393205
Number of extensions: 10264925
Number of successful extensions: 21297
Number of sequences better than 10.0: 330
Number of HSP's better than 10.0 without gapping: 20051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21125
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
