Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013097A_C01 KMC013097A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T13593 hypothetical protein 66A1.3 - fruit fly (Drosophila ... 32 3.6
ref|NP_572174.2| CG12184-PA [Drosophila melanogaster] gi|2283168... 32 3.6
gb|EAA18520.1| CCAAT-box DNA binding protein subunit B [Plasmodi... 32 6.1
>pir||T13593 hypothetical protein 66A1.3 - fruit fly (Drosophila melanogaster)
gi|3702413|emb|CAA20226.1| 1-evidence=predicted by
match~1-match_accession=AA439980~1-
match_description=LD15043.5prime LD Drosophila
melanogaster embryo BlueScript Drosophila melanogaster
cDNA clone LD15043 5prime.~1-match_species=Drosophila
melanogaster (fruit
fly)~1-method=blastn;1.4.9~1-method_score=392.00;
2330.00~1-evidence_end
Length = 958
Score = 32.3 bits (72), Expect = 3.6
Identities = 21/73 (28%), Positives = 28/73 (37%)
Frame = +1
Query: 154 TFTNSKSFNDLRHPVDSPDFLYIKSIV*STTRNGLIPLIYFILESIHKIDDHPSSCHCDS 333
T T S+S D+R P+ SP K+ LES+HK H C C S
Sbjct: 153 TQTMSQSAGDIRRPIKSPQMQNKKTQT---------------LESVHKSHKHTKKCQCKS 197
Query: 334 SSLNSDPENAMID 372
+S + D
Sbjct: 198 RRQDSKVSSCQTD 210
>ref|NP_572174.2| CG12184-PA [Drosophila melanogaster] gi|22831687|gb|AAF45961.2|
CG12184-PA [Drosophila melanogaster]
Length = 978
Score = 32.3 bits (72), Expect = 3.6
Identities = 21/73 (28%), Positives = 28/73 (37%)
Frame = +1
Query: 154 TFTNSKSFNDLRHPVDSPDFLYIKSIV*STTRNGLIPLIYFILESIHKIDDHPSSCHCDS 333
T T S+S D+R P+ SP K+ LES+HK H C C S
Sbjct: 153 TQTMSQSAGDIRRPIKSPQMQNKKTQT---------------LESVHKSHKHTKKCQCKS 197
Query: 334 SSLNSDPENAMID 372
+S + D
Sbjct: 198 RRQDSKVSSCQTD 210
>gb|EAA18520.1| CCAAT-box DNA binding protein subunit B [Plasmodium yoelii yoelii]
Length = 1365
Score = 31.6 bits (70), Expect = 6.1
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = -2
Query: 203 ESTGCRRSLKLLELVNVFFCISYYVSFLSFRHFQAILYIN 84
E+T R+ LK+ E+ N+F ++ Y+SFLS QA ++ N
Sbjct: 1219 ETTKIRKKLKINEIANLFIILNSYLSFLS---AQANIFFN 1255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,398,111
Number of Sequences: 1393205
Number of extensions: 7737468
Number of successful extensions: 17083
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17080
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
