Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013089A_C01 KMC013089A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S31196 hypothetical protein - potato 42 0.005
gb|AAD11987.1| ERF_HUMAN [Homo sapiens] gi|18490808|gb|AAH22231.... 40 0.017
ref|NP_034285.1| Est2 repressor factor [Mus musculus] gi|3023704... 40 0.022
ref|XP_218336.1| similar to Est2 repressor factor [Mus musculus]... 40 0.022
gb|AAM53268.1| putative beta-1,3-glucanase precursor, putative [... 40 0.029
>pir||S31196 hypothetical protein - potato
Length = 402
Score = 42.4 bits (98), Expect = 0.005
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = -2
Query: 594 PDGTLAYSLGLSPSSFSSPSPSTNATTGGGGGGR-APPLPPPTSSSGYLSISSAASSL 424
PDG+ AY LG+ + + STN++ GG G + +PP +SSSGYL+I+S + S+
Sbjct: 340 PDGSQAYPLGVPAIN----AVSTNSSNSGGSGSTLSASVPPASSSSGYLAITSDSVSI 393
>gb|AAD11987.1| ERF_HUMAN [Homo sapiens] gi|18490808|gb|AAH22231.1| Ets2 repressor
factor [Homo sapiens]
Length = 548
Score = 40.4 bits (93), Expect = 0.017
Identities = 37/102 (36%), Positives = 45/102 (43%), Gaps = 10/102 (9%)
Frame = +2
Query: 299 PLQPMMSSLDSTLKIPQNLKIISSTSNSTRKDKQGPS----KQYLSSEDAAEEMDK*PEE 466
PL PM T +P + SS+S+S K K P +Q + E A DK
Sbjct: 349 PLPPMAPE---TPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAVAGADK-SGG 404
Query: 467 EVGG---GSGGARPPPPPP---VVALVEGEGEEKEDGDKPSE 574
GG G+G PPPPPP V + EGE EE E D E
Sbjct: 405 SAGGLAEGAGALAPPPPPPQIKVEPISEGESEEVEVTDISDE 446
>ref|NP_034285.1| Est2 repressor factor [Mus musculus] gi|3023704|sp|P70459|ERF_MOUSE
ETS-domain transcription factor ERF
gi|1575282|gb|AAC09474.1| Erf [Mus musculus]
Length = 551
Score = 40.0 bits (92), Expect = 0.022
Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Frame = +2
Query: 299 PLQPMMSSLDSTLKIPQNLKIISSTSNSTRKDKQGPSKQYLSSEDAAEEMDK*PEEEVGG 478
PL PM T +P + SS+S+S K K P A E+ ++ GG
Sbjct: 349 PLPPMAPE---TPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAPGGTDKSSGG 405
Query: 479 --------GSGGARPPPPPP---VVALVEGEGEEKEDGDKPSE 574
G+G PPPPPP V + EGE EE E D E
Sbjct: 406 SGSGGLAEGAGAVAPPPPPPQIKVEPISEGESEEVEVTDISDE 448
>ref|XP_218336.1| similar to Est2 repressor factor [Mus musculus] [Rattus norvegicus]
Length = 612
Score = 40.0 bits (92), Expect = 0.022
Identities = 36/104 (34%), Positives = 45/104 (42%), Gaps = 12/104 (11%)
Frame = +2
Query: 299 PLQPMMSSLDSTLKIPQNLKIISSTSNSTRKDKQGPS----KQYLSSEDAAEEMDK*PEE 466
PL PM T +P + SS+S+S K K P +Q + E A DK +
Sbjct: 409 PLPPMAPE---TPPVPSSASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAPGGTDKSSDG 465
Query: 467 EVGGG----SGGARPPPPPP----VVALVEGEGEEKEDGDKPSE 574
GG +G PPPPPP V + EGE EE E D E
Sbjct: 466 SGSGGLAEGAGALAPPPPPPPQIKVEPISEGESEEVEVTDISDE 509
>gb|AAM53268.1| putative beta-1,3-glucanase precursor, putative [Arabidopsis
thaliana] gi|23197680|gb|AAN15367.1| putative
beta-1,3-glucanase precursor, putative [Arabidopsis
thaliana]
Length = 426
Score = 39.7 bits (91), Expect = 0.029
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Frame = -2
Query: 594 PDGTLAYSLGLSPSSFSSPSPSTNATTGGG----GGGR-------APPLPPPTSSSGYLS 448
PDGT AYSLG + + ++ TGGG GGGR P+ P ++S+GYL+
Sbjct: 339 PDGTQAYSLGFALNDV--VRGASGGGTGGGNSSSGGGRDKSPVFPVSPVAPDSASTGYLA 396
Query: 447 ISSAASSLERYCLLGPCLSFLVLLLVELMIL 355
IS++ + +R G LS +V +L+ +L
Sbjct: 397 ISASPVTGKRKG-KGAILSLVVSMLLARHLL 426
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,631,613
Number of Sequences: 1393205
Number of extensions: 15065480
Number of successful extensions: 132102
Number of sequences better than 10.0: 292
Number of HSP's better than 10.0 without gapping: 75639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121209
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
