Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013080A_C01 KMC013080A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9XHM1|IF38_MEDTR Eukaryotic translation initiation factor 3 ... 219 2e-56
dbj|BAC56812.1| putative Eukaryotic translation initiation facto... 211 5e-54
pir||T50773 translation initiation factor homolog p105 [imported... 204 6e-52
ref|NP_191174.1| PROBABLE EUKARYOTIC TRANSLATION INITIATION FACT... 204 6e-52
ref|NP_188926.1| eukaryotic translation initiation factor 3 (sub... 138 5e-32
>sp|Q9XHM1|IF38_MEDTR Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110)
(eIF3c) gi|11282366|pir||T50774 probable translation
initiation factor [imported] - barrel medic
gi|5106926|gb|AAD39891.1|AF106930_1 putative translation
initiation protein [Medicago truncatula]
Length = 935
Score = 219 bits (559), Expect = 2e-56
Identities = 117/167 (70%), Positives = 133/167 (79%), Gaps = 2/167 (1%)
Frame = +2
Query: 113 MASRFWTQGGSDSEEEESDRDEEVETVAVESAGQDVSNSNKYYAENEGNSDDSDDD--QK 286
M SRF+ QGG S+ ++ D + E E A D + +KY A GN+DDSDDD QK
Sbjct: 1 MTSRFFYQGGDQSDTDDEPTDIDDEPSDTEPAPTDPNGKSKYLAG--GNADDSDDDDGQK 58
Query: 287 RVVRSAKDKRFEEMAATVDQMKNAVKINDWVSLQESFDKINKQLEKVMRVTGSDKAPRIY 466
RVV+SAKDKRF+EMA+TVDQ+KNA+KINDWVSLQESFDKINKQLEKVMRV S K P +Y
Sbjct: 59 RVVKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKIPNLY 118
Query: 467 IKALVMLEDFLAEALANKDAKKKMSSSNAKALNAMKQKLKKNNKQYE 607
IKALVMLEDFLA+A ANKDAKKKMS SNAKA N+MKQKLKKNNKQYE
Sbjct: 119 IKALVMLEDFLAQASANKDAKKKMSPSNAKAFNSMKQKLKKNNKQYE 165
>dbj|BAC56812.1| putative Eukaryotic translation initiation factor 3 subunit 8 (eIF3
p110) [Oryza sativa (japonica cultivar-group)]
Length = 936
Score = 211 bits (538), Expect = 5e-54
Identities = 109/167 (65%), Positives = 128/167 (76%), Gaps = 2/167 (1%)
Frame = +2
Query: 113 MASRFWTQGGSDSEEEESDRDEEVETVAVESAGQ--DVSNSNKYYAENEGNSDDSDDDQK 286
MASRFW QG SDSEEEE + + E + + + G SN N+Y + D D +
Sbjct: 1 MASRFWGQGDSDSEEEEQEIESEAGSESEDEGGDAGGRSNQNRYLRTTNASDSDESDSGQ 60
Query: 287 RVVRSAKDKRFEEMAATVDQMKNAVKINDWVSLQESFDKINKQLEKVMRVTGSDKAPRIY 466
RVVRS KDKR EE+ TVDQM+NA+KINDWV+LQESF+K+NKQLEKV+RV S P +Y
Sbjct: 61 RVVRSLKDKRNEELKITVDQMRNAMKINDWVNLQESFEKLNKQLEKVVRVNESTTVPNMY 120
Query: 467 IKALVMLEDFLAEALANKDAKKKMSSSNAKALNAMKQKLKKNNKQYE 607
+KALV+LEDFLAEALANK+AKKKMSSSNAKALNAMKQKLKKNNKQYE
Sbjct: 121 VKALVLLEDFLAEALANKEAKKKMSSSNAKALNAMKQKLKKNNKQYE 167
>pir||T50773 translation initiation factor homolog p105 [imported] - Arabidopsis
thaliana gi|2789660|gb|AAC83464.1| eIF3c [Arabidopsis
thaliana]
Length = 900
Score = 204 bits (520), Expect = 6e-52
Identities = 112/165 (67%), Positives = 132/165 (79%)
Frame = +2
Query: 113 MASRFWTQGGSDSEEEESDRDEEVETVAVESAGQDVSNSNKYYAENEGNSDDSDDDQKRV 292
M SRF+TQ GS+SE+E D EVE V++ DV+N Y ++ G+ DD D D KRV
Sbjct: 1 MTSRFFTQVGSESEDES---DYEVEVNEVQN--DDVNNR---YLQS-GSEDDDDTDTKRV 51
Query: 293 VRSAKDKRFEEMAATVDQMKNAVKINDWVSLQESFDKINKQLEKVMRVTGSDKAPRIYIK 472
V+ AKDKRFEEM TVDQMKNA+KINDWVSLQE+FDK+NKQLEKVMR+T + K P +YIK
Sbjct: 52 VKPAKDKRFEEMTNTVDQMKNAMKINDWVSLQENFDKVNKQLEKVMRITEAVKPPTLYIK 111
Query: 473 ALVMLEDFLAEALANKDAKKKMSSSNAKALNAMKQKLKKNNKQYE 607
LVMLEDFL EALANK+AKKKMS+SN+KALN+MKQKLKKNNK YE
Sbjct: 112 TLVMLEDFLNEALANKEAKKKMSTSNSKALNSMKQKLKKNNKLYE 156
>ref|NP_191174.1| PROBABLE EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 8;
protein id: At3g56150.1, supported by cDNA: gi_17381099,
supported by cDNA: gi_2789659 [Arabidopsis thaliana]
gi|23503063|sp|O49160|IF38_ARATH Eukaryotic translation
initiation factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
gi|11282364|pir||T47732 probable translation initiation
factor eIF-3 chain 8 F18O21.110 [imported] - Arabidopsis
thaliana gi|7572913|emb|CAB87414.1| PROBABLE EUKARYOTIC
TRANSLATION INITIATION FACTOR 3 SUBUNIT 8 [Arabidopsis
thaliana] gi|17381100|gb|AAL36362.1| putative eukaryotic
translation initiation factor 3 subunit 8 [Arabidopsis
thaliana] gi|25054977|gb|AAN71960.1| putative eukaryotic
translation initiation factor 3 subunit 8 [Arabidopsis
thaliana]
Length = 900
Score = 204 bits (520), Expect = 6e-52
Identities = 112/165 (67%), Positives = 132/165 (79%)
Frame = +2
Query: 113 MASRFWTQGGSDSEEEESDRDEEVETVAVESAGQDVSNSNKYYAENEGNSDDSDDDQKRV 292
M SRF+TQ GS+SE+E D EVE V++ DV+N Y ++ G+ DD D D KRV
Sbjct: 1 MTSRFFTQVGSESEDES---DYEVEVNEVQN--DDVNNR---YLQS-GSEDDDDTDTKRV 51
Query: 293 VRSAKDKRFEEMAATVDQMKNAVKINDWVSLQESFDKINKQLEKVMRVTGSDKAPRIYIK 472
V+ AKDKRFEEM TVDQMKNA+KINDWVSLQE+FDK+NKQLEKVMR+T + K P +YIK
Sbjct: 52 VKPAKDKRFEEMTYTVDQMKNAMKINDWVSLQENFDKVNKQLEKVMRITEAVKPPTLYIK 111
Query: 473 ALVMLEDFLAEALANKDAKKKMSSSNAKALNAMKQKLKKNNKQYE 607
LVMLEDFL EALANK+AKKKMS+SN+KALN+MKQKLKKNNK YE
Sbjct: 112 TLVMLEDFLNEALANKEAKKKMSTSNSKALNSMKQKLKKNNKLYE 156
>ref|NP_188926.1| eukaryotic translation initiation factor 3 (subunit 8); protein id:
At3g22860.1 [Arabidopsis thaliana]
gi|11994715|dbj|BAB03031.1| eukaryotic translation
initiation factor 3 subunit 8-like protein [Arabidopsis
thaliana]
Length = 800
Score = 138 bits (348), Expect = 5e-32
Identities = 82/161 (50%), Positives = 102/161 (62%)
Frame = +2
Query: 125 FWTQGGSDSEEEESDRDEEVETVAVESAGQDVSNSNKYYAENEGNSDDSDDDQKRVVRSA 304
F Q GS+SE+E EEVE N+ +Y A+ D KRVV+
Sbjct: 2 FRLQSGSESEDESDFEKEEVE-----------GNNTRYLADLPDGEICCGMDTKRVVKPK 50
Query: 305 KDKRFEEMAATVDQMKNAVKINDWVSLQESFDKINKQLEKVMRVTGSDKAPRIYIKALVM 484
KDKRFEEMA T++ MK+A+ IND V LQE+F+K+NKQ+ K S K P +YIK LVM
Sbjct: 51 KDKRFEEMANTIENMKHAMNINDCVYLQETFEKLNKQISK------SVKTPTLYIKTLVM 104
Query: 485 LEDFLAEALANKDAKKKMSSSNAKALNAMKQKLKKNNKQYE 607
LEDFL E N K+KMS+SN+KALNAM+QKLKKNN QY+
Sbjct: 105 LEDFLNE--DNMKTKEKMSTSNSKALNAMRQKLKKNNLQYQ 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,185,882
Number of Sequences: 1393205
Number of extensions: 11019896
Number of successful extensions: 89167
Number of sequences better than 10.0: 730
Number of HSP's better than 10.0 without gapping: 59752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79580
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
