Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013076A_C01 KMC013076A_c01
(390 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_224839.1| similar to odd Oz/ten-m homolog 3 (Drosophila);... 33 0.87
ref|NP_082339.1| RIKEN cDNA 1600025P05 [Mus musculus] gi|1419527... 32 1.9
ref|NP_795950.1| RIKEN cDNA 5830418K08 gene [Mus musculus] gi|26... 32 2.5
ref|XP_134738.2| RIKEN cDNA 5830418K08 gene [Mus musculus] 32 2.5
dbj|BAC27977.1| unnamed protein product [Mus musculus] 32 2.5
>ref|XP_224839.1| similar to odd Oz/ten-m homolog 3 (Drosophila); odd Oz/ten-m
homolog 1 (Drosophila) [Mus musculus] [Rattus
norvegicus]
Length = 611
Score = 33.1 bits (74), Expect = 0.87
Identities = 17/67 (25%), Positives = 31/67 (45%)
Frame = +1
Query: 103 QGSLRYSKLCHGVIAIQDTFNKEALSEDQPDSNALASSLYSLQPLKIGHQCNHPSINPFS 282
+G+LR + G+ + + +S +QP +N +L L P H +HPS+ +
Sbjct: 464 KGTLRAHEFEGGIARLSQKCPYQQISPEQPANNQGQPTLQPLPPSHKQHPAHHPSVTSLN 523
Query: 283 MNPMLTR 303
N + R
Sbjct: 524 RNSLTNR 530
>ref|NP_082339.1| RIKEN cDNA 1600025P05 [Mus musculus]
gi|14195274|sp|Q9DAT5|TRMU_MOUSE tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
gi|12838169|dbj|BAB24110.1| unnamed protein product [Mus
musculus] gi|26335739|dbj|BAC31570.1| unnamed protein
product [Mus musculus] gi|26336146|dbj|BAC31758.1|
unnamed protein product [Mus musculus]
Length = 417
Score = 32.0 bits (71), Expect = 1.9
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +1
Query: 31 AMGHLLRKSFDEDEIVEQKVTEKYQGSLRYSKLCHGVIAI---QDTFNKEALSEDQPDSN 201
A GH R S +++E+ EQK T+K G R + + D+F + Q +
Sbjct: 124 ATGHYARTSLEDEEVFEQKHTKKPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQD 183
Query: 202 ALASSLYSLQPL 237
AL +++ L L
Sbjct: 184 ALRRTIFPLGEL 195
>ref|NP_795950.1| RIKEN cDNA 5830418K08 gene [Mus musculus]
gi|26326819|dbj|BAC27153.1| unnamed protein product [Mus
musculus]
Length = 1006
Score = 31.6 bits (70), Expect = 2.5
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Frame = +1
Query: 148 IQDTFNKEALSEDQPDSNALASSLYSLQPLKIGHQCNHPSIN-PFS 282
++ F+KE L Q N SS +SL PL + + HP I+ PF+
Sbjct: 170 LEKVFHKELLLHKQKSQNKSESSEHSLPPLFLSKEIEHPFISLPFA 215
>ref|XP_134738.2| RIKEN cDNA 5830418K08 gene [Mus musculus]
Length = 1006
Score = 31.6 bits (70), Expect = 2.5
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Frame = +1
Query: 148 IQDTFNKEALSEDQPDSNALASSLYSLQPLKIGHQCNHPSIN-PFS 282
++ F+KE L Q N SS +SL PL + + HP I+ PF+
Sbjct: 170 LEKVFHKELLLHKQKSQNKSESSEHSLPPLFLSKEIEHPFISLPFA 215
>dbj|BAC27977.1| unnamed protein product [Mus musculus]
Length = 912
Score = 31.6 bits (70), Expect = 2.5
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Frame = +1
Query: 148 IQDTFNKEALSEDQPDSNALASSLYSLQPLKIGHQCNHPSIN-PFS 282
++ F+KE L Q N SS +SL PL + + HP I+ PF+
Sbjct: 257 LEKVFHKELLLHKQKSQNKSESSEHSLPPLFLSKEIEHPFISLPFA 302
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.315 0.130 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 306,148,301
Number of Sequences: 1393205
Number of extensions: 5556830
Number of successful extensions: 16907
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 16643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16902
length of database: 448,689,247
effective HSP length: 105
effective length of database: 302,402,722
effective search space used: 7257665328
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
