Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013059A_C01 KMC013059A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA83062.1| KIAA1110 protein [Homo sapiens] 33 1.8
dbj|BAC65728.1| mKIAA1110 protein [Mus musculus] 31 9.1
ref|XP_145005.1| similar to KIAA1110 protein [Homo sapiens] [Mus... 31 9.1
>dbj|BAA83062.1| KIAA1110 protein [Homo sapiens]
Length = 740
Score = 33.5 bits (75), Expect = 1.8
Identities = 18/51 (35%), Positives = 25/51 (48%)
Frame = +3
Query: 249 LGKPNM*PPHPIFFRQLWMSEQSLNLKCYTPPFFSFNNPVKITSQPPLPTP 401
L KP + P+ + L S + C + P +PVK+T QPPLP P
Sbjct: 660 LDKPCLARMEPLLSQALSCYTSSSSDSCGSTPLGGPGSPVKVTHQPPLPPP 710
>dbj|BAC65728.1| mKIAA1110 protein [Mus musculus]
Length = 911
Score = 31.2 bits (69), Expect = 9.1
Identities = 17/51 (33%), Positives = 24/51 (46%)
Frame = +3
Query: 249 LGKPNM*PPHPIFFRQLWMSEQSLNLKCYTPPFFSFNNPVKITSQPPLPTP 401
L KP + P+ + L S + C + P +PVK+ QPPLP P
Sbjct: 831 LDKPCLARMEPLLSQALSCYASSSSDSCGSTPLRGPGSPVKVIHQPPLPPP 881
>ref|XP_145005.1| similar to KIAA1110 protein [Homo sapiens] [Mus musculus]
Length = 1520
Score = 31.2 bits (69), Expect = 9.1
Identities = 17/51 (33%), Positives = 24/51 (46%)
Frame = +3
Query: 249 LGKPNM*PPHPIFFRQLWMSEQSLNLKCYTPPFFSFNNPVKITSQPPLPTP 401
L KP + P+ + L S + C + P +PVK+ QPPLP P
Sbjct: 1440 LDKPCLARMEPLLSQALSCYASSSSDSCGSTPLRGPGSPVKVIHQPPLPPP 1490
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,244,671
Number of Sequences: 1393205
Number of extensions: 11714317
Number of successful extensions: 26617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26585
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
