Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013040A_C01 KMC013040A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD58727.1| phosphoenolpyruvate carboxylase [Arabidopsis tha... 173 1e-42
gb|AAD49968.1|AC008075_1 Similar to gb|X90982 phosphoenolpyruvat... 173 1e-42
ref|NP_177043.1| putative phosphoenolpyruvate carboxylase; prote... 173 1e-42
dbj|BAB39876.1| putative phosphoenolpyruvate carboxylase 2 (pepc... 163 1e-39
emb|CAB90608.1| phosphoenolpyruvate carboxylase [Anthoceros agre... 162 2e-39
>emb|CAD58727.1| phosphoenolpyruvate carboxylase [Arabidopsis thaliana]
Length = 1032
Score = 173 bits (438), Expect = 1e-42
Identities = 85/120 (70%), Positives = 106/120 (87%)
Frame = -1
Query: 546 FFQSTIDLIEMVLGKADSPIAKHYDDVLVSEERKELGRQLRSELETTGKFVLVVCGQEKL 367
FFQST++LIEMVL KAD P+ KHYD+ LVSE+R+ LG +LR EL TT K+VLV+ G EKL
Sbjct: 913 FFQSTLELIEMVLAKADIPMTKHYDEQLVSEKRRGLGTELRKELMTTEKYVLVISGHEKL 972
Query: 366 LQNNRTLRRLIENRLPFLNPMNILQVEILKRLRCDDDNHKARDALLITINGIAAGMKNTG 187
LQ+N++L++LI++RLP+LN MN+LQVEILKRLR D+DN+K RDALLITINGIAAGM+NTG
Sbjct: 973 LQDNKSLKKLIDSRLPYLNAMNMLQVEILKRLRRDEDNNKLRDALLITINGIAAGMRNTG 1032
>gb|AAD49968.1|AC008075_1 Similar to gb|X90982 phosphoenolpyruvate carboxylase (ppc1) from
Solanum tuberosum. [Arabidopsis thaliana]
Length = 980
Score = 173 bits (438), Expect = 1e-42
Identities = 85/120 (70%), Positives = 106/120 (87%)
Frame = -1
Query: 546 FFQSTIDLIEMVLGKADSPIAKHYDDVLVSEERKELGRQLRSELETTGKFVLVVCGQEKL 367
FFQST++LIEMVL KAD P+ KHYD+ LVSE+R+ LG +LR EL TT K+VLV+ G EKL
Sbjct: 861 FFQSTLELIEMVLAKADIPMTKHYDEQLVSEKRRGLGTELRKELMTTEKYVLVISGHEKL 920
Query: 366 LQNNRTLRRLIENRLPFLNPMNILQVEILKRLRCDDDNHKARDALLITINGIAAGMKNTG 187
LQ+N++L++LI++RLP+LN MN+LQVEILKRLR D+DN+K RDALLITINGIAAGM+NTG
Sbjct: 921 LQDNKSLKKLIDSRLPYLNAMNMLQVEILKRLRRDEDNNKLRDALLITINGIAAGMRNTG 980
>ref|NP_177043.1| putative phosphoenolpyruvate carboxylase; protein id: At1g68750.1
[Arabidopsis thaliana] gi|25290997|pir||C96712
hypothetical protein F14K14.14 [imported] - Arabidopsis
thaliana gi|12324139|gb|AAG52040.1|AC011914_10 putative
phosphoenolpyruvate carboxylase; 69384-74546 [Arabidopsis
thaliana]
Length = 981
Score = 173 bits (438), Expect = 1e-42
Identities = 85/120 (70%), Positives = 106/120 (87%)
Frame = -1
Query: 546 FFQSTIDLIEMVLGKADSPIAKHYDDVLVSEERKELGRQLRSELETTGKFVLVVCGQEKL 367
FFQST++LIEMVL KAD P+ KHYD+ LVSE+R+ LG +LR EL TT K+VLV+ G EKL
Sbjct: 862 FFQSTLELIEMVLAKADIPMTKHYDEQLVSEKRRGLGTELRKELMTTEKYVLVISGHEKL 921
Query: 366 LQNNRTLRRLIENRLPFLNPMNILQVEILKRLRCDDDNHKARDALLITINGIAAGMKNTG 187
LQ+N++L++LI++RLP+LN MN+LQVEILKRLR D+DN+K RDALLITINGIAAGM+NTG
Sbjct: 922 LQDNKSLKKLIDSRLPYLNAMNMLQVEILKRLRRDEDNNKLRDALLITINGIAAGMRNTG 981
>dbj|BAB39876.1| putative phosphoenolpyruvate carboxylase 2 (pepcase) (cp28) [Oryza
sativa (japonica cultivar-group)]
Length = 909
Score = 163 bits (412), Expect = 1e-39
Identities = 83/121 (68%), Positives = 100/121 (82%), Gaps = 1/121 (0%)
Frame = -1
Query: 546 FFQSTIDLIEMVLGKADSPIAKHYDDVLVSEE-RKELGRQLRSELETTGKFVLVVCGQEK 370
FFQST+DLIEMV+ KAD+P+AKHYDDVLV + R+ LG +LR EL T VL V G +K
Sbjct: 789 FFQSTVDLIEMVVAKADAPMAKHYDDVLVHDAGRRTLGAELRQELARTENCVLAVSGHKK 848
Query: 369 LLQNNRTLRRLIENRLPFLNPMNILQVEILKRLRCDDDNHKARDALLITINGIAAGMKNT 190
L NNR+LR+LI++RL +LNPMN+LQVE+L+RLR DDDN K RDALLITINGIAAGM+NT
Sbjct: 849 LSANNRSLRKLIDSRLTYLNPMNMLQVEVLRRLRQDDDNRKLRDALLITINGIAAGMRNT 908
Query: 189 G 187
G
Sbjct: 909 G 909
>emb|CAB90608.1| phosphoenolpyruvate carboxylase [Anthoceros agrestis]
Length = 338
Score = 162 bits (411), Expect = 2e-39
Identities = 80/120 (66%), Positives = 98/120 (81%)
Frame = -1
Query: 546 FFQSTIDLIEMVLGKADSPIAKHYDDVLVSEERKELGRQLRSELETTGKFVLVVCGQEKL 367
FFQST+DLIEMVL KAD PI KHY+DVLVS+ +ELG++LR E T K V + G KL
Sbjct: 219 FFQSTVDLIEMVLAKADMPITKHYEDVLVSQNVRELGKELRDEFHVTEKHVRDITGHHKL 278
Query: 366 LQNNRTLRRLIENRLPFLNPMNILQVEILKRLRCDDDNHKARDALLITINGIAAGMKNTG 187
+NN+TLRRLIE+RLP+LNP+N+LQVE+L+RLR D+ N K RDALLIT+ GIAAGM+NTG
Sbjct: 279 SENNKTLRRLIESRLPYLNPINMLQVEVLRRLRQDETNPKLRDALLITMKGIAAGMQNTG 338
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,445,432
Number of Sequences: 1393205
Number of extensions: 8637902
Number of successful extensions: 21919
Number of sequences better than 10.0: 363
Number of HSP's better than 10.0 without gapping: 21284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21794
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
