Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013021A_C01 KMC013021A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C96589 hypothetical protein T22H22.14 [imported] - Arabidop... 37 0.23
gb|AAK25932.1|AF360222_1 unknown protein [Arabidopsis thaliana] 37 0.23
ref|NP_564664.1| expressed protein; protein id: At1g54710.1, sup... 37 0.23
ref|NP_569966.1| CG3600-PA [Drosophila melanogaster] gi|4164294|... 35 0.68
dbj|BAC06348.1| Mx [Gallus gallus] gi|21956100|dbj|BAC06349.1| M... 32 5.8
>pir||C96589 hypothetical protein T22H22.14 [imported] - Arabidopsis thaliana
gi|3776567|gb|AAC64884.1| Strong similarity to F21B7.33
gi|2809264 from A. thaliana BAC gb|AC002560. EST
gb|N65119 comes from this gene. [Arabidopsis thaliana]
Length = 942
Score = 36.6 bits (83), Expect = 0.23
Identities = 15/19 (78%), Positives = 18/19 (93%)
Frame = -3
Query: 576 EDGDNDDMLGGVFAFSEEG 520
+D ++DDMLGGVFAFSEEG
Sbjct: 916 DDDEDDDMLGGVFAFSEEG 934
>gb|AAK25932.1|AF360222_1 unknown protein [Arabidopsis thaliana]
Length = 927
Score = 36.6 bits (83), Expect = 0.23
Identities = 15/19 (78%), Positives = 18/19 (93%)
Frame = -3
Query: 576 EDGDNDDMLGGVFAFSEEG 520
+D ++DDMLGGVFAFSEEG
Sbjct: 909 DDDEDDDMLGGVFAFSEEG 927
>ref|NP_564664.1| expressed protein; protein id: At1g54710.1, supported by cDNA:
gi_13430619 [Arabidopsis thaliana]
gi|23297074|gb|AAN13084.1| unknown protein [Arabidopsis
thaliana]
Length = 927
Score = 36.6 bits (83), Expect = 0.23
Identities = 15/19 (78%), Positives = 18/19 (93%)
Frame = -3
Query: 576 EDGDNDDMLGGVFAFSEEG 520
+D ++DDMLGGVFAFSEEG
Sbjct: 909 DDDEDDDMLGGVFAFSEEG 927
>ref|NP_569966.1| CG3600-PA [Drosophila melanogaster] gi|4164294|emb|CAA22835.1|
/prediction=(method:''genefinder'', version:''084'',
score:''51.86'')~/prediction=(method:''genscan'',
version:''1.0'') [Drosophila melanogaster]
gi|7290239|gb|AAF45701.1| CG3600-PA [Drosophila
melanogaster]
Length = 323
Score = 35.0 bits (79), Expect = 0.68
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = +3
Query: 483 RKGRKHETQAFINLPQRRQIHHRAYHHYHHLH 578
+ G +E + F N + I+H +HHYHH H
Sbjct: 164 QSGNSNEQEPFANNDRHHHIYHHHHHHYHHHH 195
>dbj|BAC06348.1| Mx [Gallus gallus] gi|21956100|dbj|BAC06349.1| Mx [Gallus gallus]
Length = 705
Score = 32.0 bits (71), Expect = 5.8
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 439 FVN*FLYTTNLQQFEEREESMKHKHSSTFLREGKYTTEHI 558
F N +T+ +QQ ERE HKH ST L E K T H+
Sbjct: 330 FCNELSFTSTIQQ--EREFFETHKHFSTLLDENKATIPHL 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,478,193
Number of Sequences: 1393205
Number of extensions: 11297357
Number of successful extensions: 34519
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 28225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32243
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
