Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013008A_C01 KMC013008A_c01
(691 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA90816.1| Similar to SCARECROW (U62798) [Oryza sativa (jap... 104 1e-21
ref|NP_176498.1| transcription factor SCARECROW, putative; prote... 100 2e-20
gb|AAL61821.1| chitin-inducible gibberellin-responsive protein [... 62 1e-08
ref|NP_175459.1| scarecrow-like 3; protein id: At1g50420.1, supp... 61 2e-08
pir||T51235 scarecrow-like protein 3 [imported] - Arabidopsis th... 61 2e-08
>dbj|BAA90816.1| Similar to SCARECROW (U62798) [Oryza sativa (japonica
cultivar-group)] gi|25553565|dbj|BAC24836.1|
OSJNBa0038F22.15 [Oryza sativa (japonica
cultivar-group)]
Length = 617
Score = 104 bits (260), Expect = 1e-21
Identities = 53/99 (53%), Positives = 66/99 (66%), Gaps = 4/99 (4%)
Frame = -2
Query: 690 IRNIIACEGRERAERHESFAKWRKLMVEQGGFRCMGVTERELVQSRFLLKMYSCENYSVM 511
IRN +A EG ER ERHESFA WR+ M + GGF+ G+ ERE +Q R + +M+ + Y+V
Sbjct: 506 IRNAVAFEGPERFERHESFAGWRRRMEDGGGFKNAGIGEREAMQGRMIARMFGPDKYTVQ 565
Query: 510 KQ---EEDGGEGLTLGWLDQPLYTVSAWTPV-DAAGSSS 406
GGE LTL WLDQPLYTV+AWTP D AG S+
Sbjct: 566 AHGGGGSGGGEALTLRWLDQPLYTVTAWTPAGDGAGGST 604
>ref|NP_176498.1| transcription factor SCARECROW, putative; protein id: At1g63100.1
[Arabidopsis thaliana] gi|25404404|pir||D96656
hypothetical protein F16M19.21 [imported] - Arabidopsis
thaliana gi|12323248|gb|AAG51600.1|AC010795_4
transcription factor SCARECROW, putative; 52594-50618
[Arabidopsis thaliana]
Length = 658
Score = 100 bits (249), Expect = 2e-20
Identities = 52/95 (54%), Positives = 69/95 (71%), Gaps = 9/95 (9%)
Frame = -2
Query: 690 IRNIIACEGRERAERHESFAKWRKLMVEQGGFRCMGVTERELVQSRFLLKMYSCEN---Y 520
IRNI+ACEG R ERH F WR+ M+EQ GFR +GV+ERE++QS+ LL+MY +N +
Sbjct: 561 IRNIVACEGSHRQERHVGFRHWRR-MLEQLGFRSLGVSEREVLQSKMLLRMYGSDNEGFF 619
Query: 519 SVMKQEED-GGE-----GLTLGWLDQPLYTVSAWT 433
+V + +ED GGE G+TL W +QPLYT+SAWT
Sbjct: 620 NVERSDEDNGGEGGRGGGVTLRWSEQPLYTISAWT 654
>gb|AAL61821.1| chitin-inducible gibberellin-responsive protein [Oryza sativa
(japonica cultivar-group)] gi|27817840|dbj|BAC55608.1|
OJ1127_E01.12 [Oryza sativa (japonica cultivar-group)]
Length = 544
Score = 61.6 bits (148), Expect = 1e-08
Identities = 39/85 (45%), Positives = 48/85 (55%)
Frame = -2
Query: 690 IRNIIACEGRERAERHESFAKWRKLMVEQGGFRCMGVTERELVQSRFLLKMYSCENYSVM 511
I N+IACEG ERAER+E F KW K + GFR ++ R LL+ YS +NY +
Sbjct: 465 IVNLIACEGEERAERYEPFGKW-KARLTMAGFRPSPLSSLVNATIRTLLQSYS-DNYKL- 521
Query: 510 KQEEDGGEGLTLGWLDQPLYTVSAW 436
E DG L LGW +PL SAW
Sbjct: 522 -AERDG--ALYLGWKSRPLVVSSAW 543
>ref|NP_175459.1| scarecrow-like 3; protein id: At1g50420.1, supported by cDNA:
gi_15810230, supported by cDNA: gi_20258966 [Arabidopsis
thaliana] gi|25366591|pir||E96540 hypothetical protein
F11F12.22 [imported] - Arabidopsis thaliana
gi|9454566|gb|AAF87889.1|AC012561_22 scarecrow-like 3
protein [Arabidopsis thaliana]
gi|15810231|gb|AAL07233.1| putative scarecrow 3 protein
[Arabidopsis thaliana] gi|20258967|gb|AAM14199.1|
putative scarecrow 3 protein [Arabidopsis thaliana]
Length = 482
Score = 60.8 bits (146), Expect = 2e-08
Identities = 34/85 (40%), Positives = 52/85 (61%)
Frame = -2
Query: 690 IRNIIACEGRERAERHESFAKWRKLMVEQGGFRCMGVTERELVQSRFLLKMYSCENYSVM 511
I+NII+CEG ER ERHE KW + ++ GF + ++ ++Q+R LL+ + Y +
Sbjct: 399 IKNIISCEGFERRERHEKLEKWSQ-RIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRI- 456
Query: 510 KQEEDGGEGLTLGWLDQPLYTVSAW 436
+EE G + W D+PLY+VSAW
Sbjct: 457 -KEESG--CAVICWQDRPLYSVSAW 478
>pir||T51235 scarecrow-like protein 3 [imported] - Arabidopsis thaliana
(fragment) gi|4580515|gb|AAD24404.1|AF036301_1
scarecrow-like 3 [Arabidopsis thaliana]
Length = 325
Score = 60.8 bits (146), Expect = 2e-08
Identities = 34/85 (40%), Positives = 52/85 (61%)
Frame = -2
Query: 690 IRNIIACEGRERAERHESFAKWRKLMVEQGGFRCMGVTERELVQSRFLLKMYSCENYSVM 511
I+NII+CEG ER ERHE KW + ++ GF + ++ ++Q+R LL+ + Y +
Sbjct: 242 IKNIISCEGFERRERHEKLEKWSQ-RIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRI- 299
Query: 510 KQEEDGGEGLTLGWLDQPLYTVSAW 436
+EE G + W D+PLY+VSAW
Sbjct: 300 -KEESG--CAVICWQDRPLYSVSAW 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,597,087
Number of Sequences: 1393205
Number of extensions: 13417230
Number of successful extensions: 36903
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 34962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36782
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
