Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013001A_C01 KMC013001A_c01
(451 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S16148 gene serrate protein precursor - fruit fly (Drosophi... 31 3.9
sp|P18168|SERR_DROME Serrate protein precursor (Beaded protein) ... 31 3.9
gb|AAA28938.1| serrate protein precursor gi|227466|prf||1704201A... 31 3.9
ref|NP_524527.2| Serrate CG6127-PA gi|7301557|gb|AAF56678.1| CG6... 31 3.9
gb|EAA39881.1| GLP_77_45331_44732 [Giardia lamblia ATCC 50803] 31 3.9
>pir||S16148 gene serrate protein precursor - fruit fly (Drosophila
melanogaster)
Length = 1408
Score = 30.8 bits (68), Expect = 3.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 259 LDFTYNWVFSFS*IQSQLDEHNTTLPNTLRL 351
L FT+ W SF+ I LD +NT+ P+ RL
Sbjct: 175 LPFTFRWTKSFTLILQALDMYNTSYPDAERL 205
>sp|P18168|SERR_DROME Serrate protein precursor (Beaded protein) gi|8564|emb|CAA40148.1|
Serrate protein [Drosophila melanogaster]
Length = 1408
Score = 30.8 bits (68), Expect = 3.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 259 LDFTYNWVFSFS*IQSQLDEHNTTLPNTLRL 351
L FT+ W SF+ I LD +NT+ P+ RL
Sbjct: 175 LPFTFRWTKSFTLILQALDMYNTSYPDAERL 205
>gb|AAA28938.1| serrate protein precursor gi|227466|prf||1704201A Serrate gene
Length = 1404
Score = 30.8 bits (68), Expect = 3.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 259 LDFTYNWVFSFS*IQSQLDEHNTTLPNTLRL 351
L FT+ W SF+ I LD +NT+ P+ RL
Sbjct: 171 LPFTFRWTKSFTLILQALDMYNTSYPDAERL 201
>ref|NP_524527.2| Serrate CG6127-PA gi|7301557|gb|AAF56678.1| CG6127-PA [Drosophila
melanogaster]
Length = 1404
Score = 30.8 bits (68), Expect = 3.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 259 LDFTYNWVFSFS*IQSQLDEHNTTLPNTLRL 351
L FT+ W SF+ I LD +NT+ P+ RL
Sbjct: 171 LPFTFRWTKSFTLILQALDMYNTSYPDAERL 201
>gb|EAA39881.1| GLP_77_45331_44732 [Giardia lamblia ATCC 50803]
Length = 199
Score = 30.8 bits (68), Expect = 3.9
Identities = 17/57 (29%), Positives = 31/57 (53%)
Frame = +2
Query: 176 PMVSKFSMYKFFITRAHKNHESIRLETHWTSPTTGFSLSHKSSHSWMNIILPFQTPS 346
P+ S+ + F+ + HE++RL++ ++SP S S KS H N+ +TP+
Sbjct: 31 PIDSQRKSSRNFLESSEAKHETLRLKSSYSSPCPPASRSVKSPHPNQNMSRCRRTPT 87
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,353,583
Number of Sequences: 1393205
Number of extensions: 7539951
Number of successful extensions: 18347
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18342
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
