Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012998A_C01 KMC012998A_c01
(392 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK31274.1|AC079890_10 unknown protein [Oryza sativa] 45 3e-04
ref|NP_192125.1| hypothetical protein; protein id: At4g02160.1 [... 42 0.001
emb|CAC39068.1| putative protein [Oryza sativa] 42 0.002
emb|CAB88077.1| hypothetical protein [Arabidopsis thaliana] 42 0.002
gb|AAM63519.1| glycoprotein homolog [Arabidopsis thaliana] 42 0.002
>gb|AAK31274.1|AC079890_10 unknown protein [Oryza sativa]
Length = 491
Score = 44.7 bits (104), Expect = 3e-04
Identities = 27/57 (47%), Positives = 36/57 (62%), Gaps = 8/57 (14%)
Frame = -2
Query: 346 EDSDED-DGEVSEYVNDSGLDS-------EVDRKASEFIAKFKAQIRFQKVGSIESS 200
+DSD D DGE+S N +S EVD+KA EFIA+F+ QIR Q++ SI+ S
Sbjct: 425 DDSDVDGDGELSTRGNSPRRESSPEVDENEVDKKAEEFIARFREQIRLQRIESIKKS 481
>ref|NP_192125.1| hypothetical protein; protein id: At4g02160.1 [Arabidopsis
thaliana] gi|7486841|pir||T01517 hypothetical protein
T10M13.16.1 - Arabidopsis thaliana
gi|3912930|gb|AAC78714.1| hypothetical protein
[Arabidopsis thaliana] gi|7268600|emb|CAB80709.1|
hypothetical protein [Arabidopsis thaliana]
Length = 183
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/47 (44%), Positives = 25/47 (52%)
Frame = -2
Query: 337 DEDDGEVSEYVNDSGLDSEVDRKASEFIAKFKAQIRFQKVGSIESSK 197
DEDD + Y ND G D +D KA EFI +F Q+R Q E K
Sbjct: 130 DEDDDDDENYGNDDGGDEMIDAKAEEFIVRFYEQMRMQNQAYTERYK 176
>emb|CAC39068.1| putative protein [Oryza sativa]
Length = 270
Score = 42.0 bits (97), Expect = 0.002
Identities = 22/46 (47%), Positives = 31/46 (66%)
Frame = -2
Query: 355 VPKEDSDEDDGEVSEYVNDSGLDSEVDRKASEFIAKFKAQIRFQKV 218
V +D + D E+SE + ++ EVDRKA EFIAKF+ QIR Q++
Sbjct: 227 VDHDDYNGDGDELSELAAE--VEDEVDRKADEFIAKFREQIRLQRL 270
>emb|CAB88077.1| hypothetical protein [Arabidopsis thaliana]
Length = 471
Score = 41.6 bits (96), Expect = 0.002
Identities = 20/41 (48%), Positives = 30/41 (72%)
Frame = -2
Query: 313 EYVNDSGLDSEVDRKASEFIAKFKAQIRFQKVGSIESSKDQ 191
E V++ S+VD+KA EFIAKF+ QIR Q++ SI+ S ++
Sbjct: 424 EGVSEINNGSDVDKKADEFIAKFREQIRLQRIESIKRSTNK 464
>gb|AAM63519.1| glycoprotein homolog [Arabidopsis thaliana]
Length = 473
Score = 41.6 bits (96), Expect = 0.002
Identities = 20/41 (48%), Positives = 30/41 (72%)
Frame = -2
Query: 313 EYVNDSGLDSEVDRKASEFIAKFKAQIRFQKVGSIESSKDQ 191
E V++ S+VD+KA EFIAKF+ QIR Q++ SI+ S ++
Sbjct: 426 EGVSEINNGSDVDKKADEFIAKFREQIRLQRIESIKRSTNK 466
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,100,754
Number of Sequences: 1393205
Number of extensions: 5299352
Number of successful extensions: 22465
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 16731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22062
length of database: 448,689,247
effective HSP length: 106
effective length of database: 301,009,517
effective search space used: 7224228408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
