Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012984A_C01 KMC012984A_c01
(423 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM93693.1| hypothetical protein [Oryza sativa (japonica cult... 112 8e-25
sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chlorop... 101 2e-21
ref|NP_200161.1| thylakoid lumenal 17.4 kD pentapeptide repeat f... 101 2e-21
gb|ZP_00111741.1| hypothetical protein [Nostoc punctiforme] 51 4e-06
ref|ZP_00074007.1| hypothetical protein [Trichodesmium erythraeu... 49 1e-05
>gb|AAM93693.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 236
Score = 112 bits (281), Expect = 8e-25
Identities = 53/67 (79%), Positives = 61/67 (90%)
Frame = -1
Query: 423 VLDRVNFEKADLQGAVFKNTVLSGSTFDDAKLEGAVFEDTIIGYIDLQKLCRNKTIADDW 244
V+DRVNFEKADLQGA+F+NTVLSGSTFDDAK++ VFEDTIIGYIDLQKLC N +I+ D
Sbjct: 170 VIDRVNFEKADLQGAIFRNTVLSGSTFDDAKMQDVVFEDTIIGYIDLQKLCTNTSISADS 229
Query: 243 RVELGCR 223
R+ELGCR
Sbjct: 230 RLELGCR 236
>sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chloroplast precursor (P17.4)
Length = 236
Score = 101 bits (252), Expect = 2e-21
Identities = 47/67 (70%), Positives = 60/67 (89%)
Frame = -1
Query: 423 VLDRVNFEKADLQGAVFKNTVLSGSTFDDAKLEGAVFEDTIIGYIDLQKLCRNKTIADDW 244
V+DRVNF K++L+GAVF+NTVLSGSTF++A LE VFEDTIIGYIDLQK+CRN++I ++
Sbjct: 170 VIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICRNESINEEG 229
Query: 243 RVELGCR 223
R+ LGCR
Sbjct: 230 RLVLGCR 236
>ref|NP_200161.1| thylakoid lumenal 17.4 kD pentapeptide repeat family protein,
chloroplast precursor; protein id: At5g53490.1,
supported by cDNA: gi_13899114 [Arabidopsis thaliana]
gi|9759188|dbj|BAB09725.1| thylakoid lumenal 17.4 kD
protein, chloroplast precursor (P17.4) [Arabidopsis
thaliana] gi|13899115|gb|AAK48979.1|AF370552_1 thylakoid
lumenal 17.4 kD protein, chloroplast precursor (P17.4)
[Arabidopsis thaliana] gi|28059599|gb|AAO30073.1|
thylakoid lumenal 17.4 kD protein, chloroplast precursor
(P17.4) [Arabidopsis thaliana]
Length = 236
Score = 101 bits (252), Expect = 2e-21
Identities = 47/67 (70%), Positives = 60/67 (89%)
Frame = -1
Query: 423 VLDRVNFEKADLQGAVFKNTVLSGSTFDDAKLEGAVFEDTIIGYIDLQKLCRNKTIADDW 244
V+DRVNF K++L+GAVF+NTVLSGSTF++A LE VFEDTIIGYIDLQK+CRN++I ++
Sbjct: 170 VIDRVNFGKSNLKGAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICRNESINEEG 229
Query: 243 RVELGCR 223
R+ LGCR
Sbjct: 230 RLVLGCR 236
>gb|ZP_00111741.1| hypothetical protein [Nostoc punctiforme]
Length = 174
Score = 50.8 bits (120), Expect = 4e-06
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = -1
Query: 423 VLDRVNFEKADLQGAVFKNTVLSGSTFDDAKLEGAVFEDTIIGYIDLQKLCR-----NKT 259
++D+VN KADL A+FK +L + F+D ++GA F D I+ +++LCR N
Sbjct: 103 MVDQVNLTKADLSDAIFKEALLLRAIFNDVNIDGADFTDAILDRAQIKELCRKASGVNSK 162
Query: 258 IADDWRVELGCR 223
R LGC+
Sbjct: 163 TGVQTRESLGCQ 174
>ref|ZP_00074007.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 165
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Frame = -1
Query: 417 DRVNFEKADLQGAVFKNTVLSGSTFDDAKLEGAVFEDTIIGYIDLQKLC-----RNKTIA 253
DRV+F+K+DL A+F + +L STF DA + G F ++ ++ +C +NKT
Sbjct: 96 DRVSFDKSDLTNAIFTDAMLMSSTFRDATVIGTDFSGAMVDRYQIKLMCETASGKNKTTG 155
Query: 252 DDWRVELGC 226
+ R LGC
Sbjct: 156 VETRESLGC 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 319,480,665
Number of Sequences: 1393205
Number of extensions: 5977199
Number of successful extensions: 14260
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 13561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14235
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
