Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012979A_C01 KMC012979A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86283.1| kinesin-like protein NACK1 [Nicotiana tabacum] 220 1e-56
gb|AAF25984.1|AC013354_3 F15H18.12 [Arabidopsis thaliana] 211 4e-54
ref|NP_173273.2| kinesin heavy chain isolog, putative; protein i... 211 4e-54
dbj|BAB32972.1| putative kinesin [Oryza sativa (japonica cultiva... 194 9e-49
ref|NP_189907.1| kinesin -like protein; protein id: At3g43210.1 ... 193 1e-48
>dbj|BAB86283.1| kinesin-like protein NACK1 [Nicotiana tabacum]
Length = 959
Score = 220 bits (560), Expect = 1e-56
Identities = 106/142 (74%), Positives = 125/142 (87%)
Frame = -1
Query: 587 RRLTWLHQHLAELGNASPAPHVGDEPTISLSSSLRALKREREFLAKRMTSRFTLEEREEL 408
RRLTWL QHLAELGNA+PA VG+EPT+SLSSS+RALKREREFLAKR+T+R T EER+ L
Sbjct: 820 RRLTWLQQHLAELGNATPA-RVGNEPTVSLSSSIRALKREREFLAKRLTTRLTAEERDYL 878
Query: 407 YYKWDVPLEGKQRKLQFVSKLWTDPHDQKHVQESAEIVAKLVGLSSTRGNMSKEMFELNF 228
Y KW+VPLEGKQR++QF++KLWT+PHD KHV ESAEIVAKLVG GNMS+EMFELNF
Sbjct: 879 YIKWEVPLEGKQRRMQFINKLWTNPHDAKHVHESAEIVAKLVGFCE-GGNMSREMFELNF 937
Query: 227 VLPSDKRPWLMGWNPITNLLNL 162
VLPSD+RPW GWN I++LL++
Sbjct: 938 VLPSDRRPWFAGWNQISDLLHI 959
>gb|AAF25984.1|AC013354_3 F15H18.12 [Arabidopsis thaliana]
Length = 1003
Score = 211 bits (538), Expect = 4e-54
Identities = 105/142 (73%), Positives = 123/142 (85%)
Frame = -1
Query: 587 RRLTWLHQHLAELGNASPAPHVGDEPTISLSSSLRALKREREFLAKRMTSRFTLEEREEL 408
RRLTWL QHLAE+GNA+PA + DE +SLSSS++AL+REREFLAKR+ SR T EEREEL
Sbjct: 864 RRLTWLEQHLAEVGNATPARNC-DESVVSLSSSIKALRREREFLAKRVNSRLTPEEREEL 922
Query: 407 YYKWDVPLEGKQRKLQFVSKLWTDPHDQKHVQESAEIVAKLVGLSSTRGNMSKEMFELNF 228
Y KWDVPLEGKQRKLQFV+KLWTDP+D +HVQESAEIVAKLVG + GN+SKEMFELNF
Sbjct: 923 YMKWDVPLEGKQRKLQFVNKLWTDPYDSRHVQESAEIVAKLVGFCES-GNISKEMFELNF 981
Query: 227 VLPSDKRPWLMGWNPITNLLNL 162
+PSDKR W +GW+ I+NLL+L
Sbjct: 982 AVPSDKRQWNIGWDNISNLLHL 1003
>ref|NP_173273.2| kinesin heavy chain isolog, putative; protein id: At1g18370.1,
supported by cDNA: gi_19979626 [Arabidopsis thaliana]
gi|19979627|dbj|BAB88748.1| AtNACK1 kinesin-like protein
[Arabidopsis thaliana]
Length = 974
Score = 211 bits (538), Expect = 4e-54
Identities = 105/142 (73%), Positives = 123/142 (85%)
Frame = -1
Query: 587 RRLTWLHQHLAELGNASPAPHVGDEPTISLSSSLRALKREREFLAKRMTSRFTLEEREEL 408
RRLTWL QHLAE+GNA+PA + DE +SLSSS++AL+REREFLAKR+ SR T EEREEL
Sbjct: 835 RRLTWLEQHLAEVGNATPARNC-DESVVSLSSSIKALRREREFLAKRVNSRLTPEEREEL 893
Query: 407 YYKWDVPLEGKQRKLQFVSKLWTDPHDQKHVQESAEIVAKLVGLSSTRGNMSKEMFELNF 228
Y KWDVPLEGKQRKLQFV+KLWTDP+D +HVQESAEIVAKLVG + GN+SKEMFELNF
Sbjct: 894 YMKWDVPLEGKQRKLQFVNKLWTDPYDSRHVQESAEIVAKLVGFCES-GNISKEMFELNF 952
Query: 227 VLPSDKRPWLMGWNPITNLLNL 162
+PSDKR W +GW+ I+NLL+L
Sbjct: 953 AVPSDKRQWNIGWDNISNLLHL 974
>dbj|BAB32972.1| putative kinesin [Oryza sativa (japonica cultivar-group)]
Length = 954
Score = 194 bits (492), Expect = 9e-49
Identities = 92/140 (65%), Positives = 115/140 (81%)
Frame = -1
Query: 587 RRLTWLHQHLAELGNASPAPHVGDEPTISLSSSLRALKREREFLAKRMTSRFTLEEREEL 408
RRLTWL QH AE+G+ASPA GD+ TISL+SS++AL+ EREFLA+RM SR T EERE L
Sbjct: 811 RRLTWLQQHFAEVGDASPA--AGDDSTISLASSIKALRNEREFLARRMGSRLTEEERERL 868
Query: 407 YYKWDVPLEGKQRKLQFVSKLWTDPHDQKHVQESAEIVAKLVGLSSTRGNMSKEMFELNF 228
+ KW VPLE KQRKLQ V++LWTDP+DQ H+ ESA+IVA+LVG GN+SKEMFELNF
Sbjct: 869 FIKWQVPLEAKQRKLQLVNRLWTDPNDQAHIDESADIVARLVGFCE-GGNISKEMFELNF 927
Query: 227 VLPSDKRPWLMGWNPITNLL 168
+P+ ++PWLMGW PI+N++
Sbjct: 928 AVPASRKPWLMGWQPISNMI 947
>ref|NP_189907.1| kinesin -like protein; protein id: At3g43210.1 [Arabidopsis thaliana]
gi|11358478|pir||T49235 kinesin-like protein -
Arabidopsis thaliana gi|7649361|emb|CAB89042.1|
kinesin-like protein [Arabidopsis thaliana]
Length = 932
Score = 193 bits (491), Expect = 1e-48
Identities = 94/142 (66%), Positives = 115/142 (80%)
Frame = -1
Query: 587 RRLTWLHQHLAELGNASPAPHVGDEPTISLSSSLRALKREREFLAKRMTSRFTLEEREEL 408
RRLTWL QHLAELGNASPA +GDEP ++SS+RALK+ERE+LAKR+ ++ EERE L
Sbjct: 792 RRLTWLEQHLAELGNASPAL-LGDEPASYVASSIRALKQEREYLAKRVNTKLGAEEREML 850
Query: 407 YYKWDVPLEGKQRKLQFVSKLWTDPHDQKHVQESAEIVAKLVGLSSTRGNMSKEMFELNF 228
Y KWDVP GKQR+ QF++KLWTDPH+ +HV+ESAEIVAKLVG + + KEMFELNF
Sbjct: 851 YLKWDVPPVGKQRRQQFINKLWTDPHNMQHVRESAEIVAKLVGFCDSGETIRKEMFELNF 910
Query: 227 VLPSDKRPWLMGWNPITNLLNL 162
PSDK+ W+MGWN I+NLL+L
Sbjct: 911 ASPSDKKTWMMGWNFISNLLHL 932
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,910,187
Number of Sequences: 1393205
Number of extensions: 9702027
Number of successful extensions: 23930
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 23398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23902
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
