Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012953A_C01 KMC012953A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565922.1| expressed protein; protein id: At2g40080.1, sup... 103 1e-21
ref|NP_180556.1| hypothetical protein; protein id: At2g29950.1 [... 87 1e-16
gb|AAD27669.1|AF119222_1 hypothetical protein [Oryza sativa] 82 3e-15
ref|NP_565334.1| Expressed protein; protein id: At2g06255.1, sup... 82 5e-15
gb|AAD27564.1|AF114171_5 hypothetical protein [Sorghum bicolor] 82 5e-15
>ref|NP_565922.1| expressed protein; protein id: At2g40080.1, supported by cDNA:
9398., supported by cDNA: gi_14334557, supported by
cDNA: gi_17065629 [Arabidopsis thaliana]
gi|25408665|pir||A84825 hypothetical protein At2g40080
[imported] - Arabidopsis thaliana
gi|2088659|gb|AAB95293.1| expressed protein [Arabidopsis
thaliana] gi|14334558|gb|AAK59687.1| unknown protein
[Arabidopsis thaliana] gi|17065630|gb|AAL33809.1|
unknown protein [Arabidopsis thaliana]
gi|21618014|gb|AAM67064.1| unknown [Arabidopsis
thaliana]
Length = 111
Score = 103 bits (258), Expect = 1e-21
Identities = 52/84 (61%), Positives = 66/84 (77%)
Frame = -1
Query: 502 DXEAWATMNKSFRQVQSVLDRNRLLIQQVNEXQQSRMPDNMVKNVSLIQELNGNISKVVS 323
D W ++++FRQVQSVLDRNR LIQQVN+ QSRM DNM KNV+LIQELNGNISKVV+
Sbjct: 22 DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81
Query: 322 LYSDLNSNFSNVCQQQQRFNNGRG 251
+YSDLN++FS+ + ++G G
Sbjct: 82 MYSDLNTSFSSGFHGGKNGHDGGG 105
>ref|NP_180556.1| hypothetical protein; protein id: At2g29950.1 [Arabidopsis
thaliana] gi|7459222|pir||T02490 hypothetical protein
At2g29950 [imported] - Arabidopsis thaliana
gi|3420056|gb|AAC31857.1| hypothetical protein
[Arabidopsis thaliana]
Length = 125
Score = 87.0 bits (214), Expect = 1e-16
Identities = 40/78 (51%), Positives = 57/78 (72%)
Frame = -1
Query: 502 DXEAWATMNKSFRQVQSVLDRNRLLIQQVNEXQQSRMPDNMVKNVSLIQELNGNISKVVS 323
D E W T++ F++ Q LD+NR LIQ+VNE SR+PDN+ +NV LI E+NGNIS+V+
Sbjct: 34 DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93
Query: 322 LYSDLNSNFSNVCQQQQR 269
+YSDL+ NF+ Q++R
Sbjct: 94 IYSDLSLNFAKKFDQRRR 111
>gb|AAD27669.1|AF119222_1 hypothetical protein [Oryza sativa]
Length = 117
Score = 82.4 bits (202), Expect = 3e-15
Identities = 37/70 (52%), Positives = 55/70 (77%)
Frame = -1
Query: 502 DXEAWATMNKSFRQVQSVLDRNRLLIQQVNEXQQSRMPDNMVKNVSLIQELNGNISKVVS 323
D + T +KSF QVQS+LD+NR+LI ++N+ +SR PDN+ +NV LI+ELN NI +VV
Sbjct: 16 DNKLIQTFHKSFVQVQSILDQNRMLINEINQNHESRAPDNLTRNVGLIRELNNNIRRVVG 75
Query: 322 LYSDLNSNFS 293
LY+DL+++F+
Sbjct: 76 LYADLSASFA 85
>ref|NP_565334.1| Expressed protein; protein id: At2g06255.1, supported by cDNA:
267559. [Arabidopsis thaliana]
gi|20197919|gb|AAM15312.1| Expressed protein
[Arabidopsis thaliana] gi|21554948|gb|AAM63737.1|
unknown [Arabidopsis thaliana]
Length = 109
Score = 81.6 bits (200), Expect = 5e-15
Identities = 37/85 (43%), Positives = 57/85 (66%)
Frame = -1
Query: 502 DXEAWATMNKSFRQVQSVLDRNRLLIQQVNEXQQSRMPDNMVKNVSLIQELNGNISKVVS 323
D + T KSF QVQ++LD NRLLI ++N+ +S++PDN+ +NV LI+ELN N+ +V
Sbjct: 17 DGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRVAH 76
Query: 322 LYSDLNSNFSNVCQQQQRFNNGRGK 248
LY DL++NFS + ++ G+
Sbjct: 77 LYVDLSNNFSKSMEASSEGDSSEGR 101
>gb|AAD27564.1|AF114171_5 hypothetical protein [Sorghum bicolor]
Length = 438
Score = 81.6 bits (200), Expect = 5e-15
Identities = 37/70 (52%), Positives = 55/70 (77%)
Frame = -1
Query: 502 DXEAWATMNKSFRQVQSVLDRNRLLIQQVNEXQQSRMPDNMVKNVSLIQELNGNISKVVS 323
D + T +KSF QVQS+LD+NR+LI ++N+ +SR PDN+ +NV LI+ELN NI +VV
Sbjct: 10 DGKLIQTFHKSFVQVQSLLDQNRMLISEINQNHESRAPDNLTRNVGLIRELNNNIRRVVG 69
Query: 322 LYSDLNSNFS 293
LY+DL+++F+
Sbjct: 70 LYADLSASFA 79
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,845,678
Number of Sequences: 1393205
Number of extensions: 10608647
Number of successful extensions: 39051
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 35246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38852
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
