Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012938A_C01 KMC012938A_c01
(1003 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM77651.1|AF522274_1 cp10-like protein [Gossypium hirsutum] 380 e-104
gb|AAF60293.1| chaperonin 21 precursor [Lycopersicon esculentum] 363 2e-99
ref|NP_197572.1| chloroplast Cpn21 protein; protein id: At5g2072... 360 2e-98
pir||T52122 chaperonin 10 [imported] - Arabidopsis thaliana gi|3... 350 1e-95
sp|Q02073|CH1C_SPIOL 20 kDa chaperonin, chloroplast precursor (P... 314 2e-84
>gb|AAM77651.1|AF522274_1 cp10-like protein [Gossypium hirsutum]
Length = 256
Score = 380 bits (975), Expect = e-104
Identities = 195/256 (76%), Positives = 226/256 (88%), Gaps = 4/256 (1%)
Frame = -3
Query: 950 MATTQLTASSI--STRNVASFEGLR--PIQFPCAGLVRIANPTRRSFRGLLVKAATVVAP 783
MAT+QLTASS+ S RN+AS +GLR ++F G ++ T RSFRGL+VKAATVVAP
Sbjct: 1 MATSQLTASSVTASARNLASLQGLRLSTVKFSSFGTLKPGAVTSRSFRGLVVKAATVVAP 60
Query: 782 KFTAIKPLGDRVLVKIKESEEKSQGGILLPTTAQTKPQGGEVVAVGEGKTIGKSQVEISV 603
K+T++KPLGDRVLVKIKE+EEK++GGILLPTTAQ+KPQGGEVVAVGEGKTIG ++ E SV
Sbjct: 61 KYTSVKPLGDRVLVKIKETEEKTEGGILLPTTAQSKPQGGEVVAVGEGKTIGNTKSESSV 120
Query: 602 TTGAQVVYSKYAGTEVEFNGTKHLILKDDDIVGILETEDIKDLKPLNDRVLIKVAVAEEK 423
TGAQV+YSKYAGTEVEFNG HL+LK+DDIVG+LET+DIKDLKPLNDRV IKV+ AEEK
Sbjct: 121 KTGAQVIYSKYAGTEVEFNGANHLLLKEDDIVGLLETDDIKDLKPLNDRVFIKVSEAEEK 180
Query: 422 TAGGLLLTEATKEKPSIGTVIAVGPGPLGEEGKRKPLAIAPGNTVLYSKYAGNDFKGKDG 243
TAGGLLLTEA+KEKPSIGTVIAVGPG L EEG KPL+++PGNTVLYSKYAGNDFKG DG
Sbjct: 181 TAGGLLLTEASKEKPSIGTVIAVGPGTLDEEGNLKPLSVSPGNTVLYSKYAGNDFKGNDG 240
Query: 242 SDYITLRSSDVMAILS 195
S+YI LR+SDVMA+LS
Sbjct: 241 SNYIALRASDVMAVLS 256
>gb|AAF60293.1| chaperonin 21 precursor [Lycopersicon esculentum]
Length = 253
Score = 363 bits (932), Expect = 2e-99
Identities = 187/253 (73%), Positives = 215/253 (84%), Gaps = 1/253 (0%)
Frame = -3
Query: 950 MATTQLTASSISTRNVASFEGLRPIQF-PCAGLVRIANPTRRSFRGLLVKAATVVAPKFT 774
MA+TQLTASSIS ASFEGLR + + RSF L+VKAAT VAPK+T
Sbjct: 1 MASTQLTASSISGNGFASFEGLRSTCIVKTVSFAPLKHNNSRSFSRLVVKAATTVAPKYT 60
Query: 773 AIKPLGDRVLVKIKESEEKSQGGILLPTTAQTKPQGGEVVAVGEGKTIGKSQVEISVTTG 594
+KPLGDRVLVKIK +EEK+ GGILLP + Q+KP GGEVVAVGEG + GK++V+ISV TG
Sbjct: 61 TLKPLGDRVLVKIKTAEEKTVGGILLPVSVQSKPNGGEVVAVGEGHSAGKTKVDISVKTG 120
Query: 593 AQVVYSKYAGTEVEFNGTKHLILKDDDIVGILETEDIKDLKPLNDRVLIKVAVAEEKTAG 414
AQV+YSKYAGTEVEF+G+KHLILK+DDIVGILET+D+KDL+PLNDRVLIKVA AEEKTAG
Sbjct: 121 AQVIYSKYAGTEVEFDGSKHLILKEDDIVGILETDDVKDLQPLNDRVLIKVAEAEEKTAG 180
Query: 413 GLLLTEATKEKPSIGTVIAVGPGPLGEEGKRKPLAIAPGNTVLYSKYAGNDFKGKDGSDY 234
GLLLTEA KEKPSIGT+IAVGPGPL EEG RKPL+++PGNTVLYSKYAG++FKG DGSDY
Sbjct: 181 GLLLTEAAKEKPSIGTIIAVGPGPLDEEGNRKPLSVSPGNTVLYSKYAGSEFKGADGSDY 240
Query: 233 ITLRSSDVMAILS 195
ITLR SDVMA+LS
Sbjct: 241 ITLRVSDVMAVLS 253
>ref|NP_197572.1| chloroplast Cpn21 protein; protein id: At5g20720.1, supported by
cDNA: gi_10179871, supported by cDNA: gi_14334611,
supported by cDNA: gi_14587372, supported by cDNA:
gi_16226814, supported by cDNA: gi_16226910, supported
by cDNA: gi_17065645, supported by cDNA: gi_3057149
[Arabidopsis thaliana] gi|12643263|sp|O65282|CH1C_ARATH
20 kDa chaperonin, chloroplast precursor (Protein Cpn21)
(Chloroplast protein Cpn10) (Chloroplast chaperonin 10)
(Ch-CPN10) (Chaperonin 20) gi|25453529|pir||T52613
chaperonin 21 precursor, chloroplast [imported] -
Arabidopsis thaliana gi|4127456|emb|CAA09368.1| Cpn21
protein [Arabidopsis thaliana]
gi|10179872|gb|AAG13931.1|AF268068_1 chaperonin 10
[Arabidopsis thaliana] gi|14334612|gb|AAK59484.1|
putative chloroplast Cpn21 protein [Arabidopsis
thaliana] gi|14587373|dbj|BAB61619.1| chaperonin 20
[Arabidopsis thaliana]
gi|16226815|gb|AAL16269.1|AF428339_1 AT5g20720/T1M15_120
[Arabidopsis thaliana]
gi|16226911|gb|AAL16296.1|AF428366_1 AT5g20720/T1M15_120
[Arabidopsis thaliana] gi|17065646|gb|AAL33817.1|
putative chloroplast Cpn21 protein [Arabidopsis
thaliana]
Length = 253
Score = 360 bits (923), Expect = 2e-98
Identities = 189/254 (74%), Positives = 218/254 (85%), Gaps = 2/254 (0%)
Frame = -3
Query: 950 MATTQLTASSI--STRNVASFEGLRPIQFPCAGLVRIANPTRRSFRGLLVKAATVVAPKF 777
MA TQLTAS + S R++AS +GLR + L + + FR L+VKAA+VVAPK+
Sbjct: 1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSL-KPGTLRQSQFRRLVVKAASVVAPKY 59
Query: 776 TAIKPLGDRVLVKIKESEEKSQGGILLPTTAQTKPQGGEVVAVGEGKTIGKSQVEISVTT 597
T+IKPLGDRVLVKIKE+EEK+ GGILLP+TAQ+KPQGGEVVAVGEG+TIGK++++I+V T
Sbjct: 60 TSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPT 119
Query: 596 GAQVVYSKYAGTEVEFNGTKHLILKDDDIVGILETEDIKDLKPLNDRVLIKVAVAEEKTA 417
GAQ++YSKYAGTEVEFN KHLILK+DDIVGILETEDIKDLKPLNDRV IKVA AEEKTA
Sbjct: 120 GAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTA 179
Query: 416 GGLLLTEATKEKPSIGTVIAVGPGPLGEEGKRKPLAIAPGNTVLYSKYAGNDFKGKDGSD 237
GGLLLTE TKEKPSIGTVIAVGPG L EEGK PL ++ G+TVLYSKYAGNDFKGKDGS+
Sbjct: 180 GGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSN 239
Query: 236 YITLRSSDVMAILS 195
YI LR+SDVMAILS
Sbjct: 240 YIALRASDVMAILS 253
>pir||T52122 chaperonin 10 [imported] - Arabidopsis thaliana
gi|3057150|gb|AAC14026.1| chaperonin 10 [Arabidopsis
thaliana]
Length = 254
Score = 350 bits (899), Expect = 1e-95
Identities = 187/255 (73%), Positives = 216/255 (84%), Gaps = 3/255 (1%)
Frame = -3
Query: 950 MATTQLTASSI--STRNVASFEGLRPIQFPCAGLVRIANPTRRSFRGLLVKAATVVAPKF 777
MA TQLTAS + S R++AS +GLR + L + + FR L+VKAA+VVAPK+
Sbjct: 1 MAATQLTASPVTMSARSLASLDGLRASSVKVSSL-KPGTLRQSQFRRLVVKAASVVAPKY 59
Query: 776 TAIKPLGDRVLVKIKESEEKSQGGIL-LPTTAQTKPQGGEVVAVGEGKTIGKSQVEISVT 600
T+IKPLGDRVLVKIKE+EEK+ GGIL +TAQ+KPQGGEVVAVGEG+TIGK++++I+V
Sbjct: 60 TSIKPLGDRVLVKIKEAEEKTLGGILTFHSTAQSKPQGGEVVAVGEGRTIGKNKIDITVP 119
Query: 599 TGAQVVYSKYAGTEVEFNGTKHLILKDDDIVGILETEDIKDLKPLNDRVLIKVAVAEEKT 420
TGAQ++YSKYAGTEVEFN KHLILK+DDIVGILETEDIKDLKPLNDRV IKVA AEEKT
Sbjct: 120 TGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKT 179
Query: 419 AGGLLLTEATKEKPSIGTVIAVGPGPLGEEGKRKPLAIAPGNTVLYSKYAGNDFKGKDGS 240
AGGLLLTE TKEKPSIGTVIAVGPG L EEGK PL ++ G+TVLYSKYAGNDFKGKDGS
Sbjct: 180 AGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGS 239
Query: 239 DYITLRSSDVMAILS 195
+YI LR+SDVMAILS
Sbjct: 240 NYIALRASDVMAILS 254
>sp|Q02073|CH1C_SPIOL 20 kDa chaperonin, chloroplast precursor (Protein Cpn21)
(Chloroplast protein Cpn10) (Chloroplast chaperonin 10)
(Ch-CPN10) gi|421794|pir||A46176 chaperonin 10 - spinach
gi|170107|gb|AAB59307.1| chaperonin 10
Length = 255
Score = 314 bits (804), Expect = 2e-84
Identities = 160/255 (62%), Positives = 197/255 (76%), Gaps = 3/255 (1%)
Frame = -3
Query: 950 MATTQLTA-SSISTRNVASFEGLRPIQFPCAGLVRIANP--TRRSFRGLLVKAATVVAPK 780
MA T LT+ SS++ + SFEGLR V +A P T RSFRGL+V+AA++ K
Sbjct: 1 MAATHLTSTSSLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSK 60
Query: 779 FTAIKPLGDRVLVKIKESEEKSQGGILLPTTAQTKPQGGEVVAVGEGKTIGKSQVEISVT 600
+T++KPLGDRVL+K K EEK+ GI LPT AQ KPQ GEVVA+G GK +G ++ ++V
Sbjct: 61 YTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVK 120
Query: 599 TGAQVVYSKYAGTEVEFNGTKHLILKDDDIVGILETEDIKDLKPLNDRVLIKVAVAEEKT 420
TGA+VVYSKY GTE+E +G+ HLI+K+DDI+GILET+D+KDLKPLNDR+LIKVA E KT
Sbjct: 121 TGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKT 180
Query: 419 AGGLLLTEATKEKPSIGTVIAVGPGPLGEEGKRKPLAIAPGNTVLYSKYAGNDFKGKDGS 240
+GGLLL E++KEKPS GTV+A GPG L EEG R PL + GNTVLYSKYAGNDFKG DGS
Sbjct: 181 SGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGS 240
Query: 239 DYITLRSSDVMAILS 195
DY+ LR SDVMA+LS
Sbjct: 241 DYMVLRVSDVMAVLS 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 901,492,464
Number of Sequences: 1393205
Number of extensions: 21163182
Number of successful extensions: 58434
Number of sequences better than 10.0: 403
Number of HSP's better than 10.0 without gapping: 54127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58018
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57669751843
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
