Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012927A_C01 KMC012927A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_656559.1| hypothetical protein predicted by GeneMark [Bac... 33 1.3
gb|AAO50899.1| similar to Dictyostelium discoideum (Slime mold).... 33 2.2
ref|NP_342341.1| Polysaccharide biosynthesis related protein [Su... 31 6.5
ref|NP_343049.1| Polysaccharide biosynthesis related protein [Su... 31 6.5
ref|NP_570232.1| SPV072 RNA polymerase-associated protein RAP94 ... 31 8.5
>ref|NP_656559.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
A2012]
Length = 100
Score = 33.5 bits (75), Expect = 1.3
Identities = 18/67 (26%), Positives = 38/67 (55%)
Frame = -2
Query: 401 WVPMFSEVLLKSNFVHLVLPYFFSVMSIYTSFRFGLSPLSLFPRTLSLSLHHNSSIKIII 222
++PMF+ L++N V L++ FF +++I+ S + L + + L + H + I++
Sbjct: 26 YIPMFTSQSLEANIVTLII--FFCMIAIWCSISYTLLRAPILAKVLERNCH--IIVXIVL 81
Query: 221 IGRDMYL 201
IG M++
Sbjct: 82 IGLGMFI 88
>gb|AAO50899.1| similar to Dictyostelium discoideum (Slime mold). Hypothetical
127.0 kDa protein
Length = 1376
Score = 32.7 bits (73), Expect = 2.2
Identities = 18/73 (24%), Positives = 38/73 (51%), Gaps = 6/73 (8%)
Frame = -2
Query: 455 CTKIPNLKFIKSPFLNLFWVPMFSEVL-LKSNFVHLVL-----PYFFSVMSIYTSFRFGL 294
CT ++ F+ N +WV F L + +N ++L + ++ + SIY +F
Sbjct: 172 CTLSTSIGFLPDGGSNNYWVLNFQTPLSIATNSLNLTIWFADKTFYIDIPSIYKTFIGSF 231
Query: 293 SPLSLFPRTLSLS 255
SP++L+P ++++
Sbjct: 232 SPITLYPNQINIT 244
>ref|NP_342341.1| Polysaccharide biosynthesis related protein [Sulfolobus
solfataricus] gi|25395113|pir||D90234 polysaccharide
biosynthesis related protein [imported] - Sulfolobus
solfataricus gi|6015640|emb|CAB57467.1| hypothetical
protein [Sulfolobus solfataricus]
gi|13814019|gb|AAK41131.1| Polysaccharide biosynthesis
related protein [Sulfolobus solfataricus]
Length = 469
Score = 31.2 bits (69), Expect = 6.5
Identities = 24/81 (29%), Positives = 40/81 (48%), Gaps = 3/81 (3%)
Frame = -2
Query: 434 KFIKSPFLNLFWVPMFSEVLLKSNFVHLVLPYFFSVM--SIYTSFRFGLSPLSLFPRTLS 261
KF+ PFL +P+F LL N+V L +PY F + ++ + G+ + T +
Sbjct: 82 KFLSFPFLA---IPVFLIFLLFPNYVKLAIPYLFLYLLNNVLVAIMIGMDMFTETAITGN 138
Query: 260 LSLHHNSSIKII-IIGRDMYL 201
L L I II ++ ++YL
Sbjct: 139 LFLIIRWGISIIAVLSHNIYL 159
>ref|NP_343049.1| Polysaccharide biosynthesis related protein [Sulfolobus
solfataricus] gi|25393938|pir||H90322 polysaccharide
biosynthesis related protein [imported] - Sulfolobus
solfataricus gi|13814867|gb|AAK41839.1| Polysaccharide
biosynthesis related protein [Sulfolobus solfataricus]
Length = 469
Score = 31.2 bits (69), Expect = 6.5
Identities = 25/81 (30%), Positives = 40/81 (48%), Gaps = 3/81 (3%)
Frame = -2
Query: 434 KFIKSPFLNLFWVPMFSEVLLKSNFVHLVLPYFFSVM--SIYTSFRFGLSPLSLFPRTLS 261
KF+ PFL L P+F +LL N+V L +PY F + + S G+ + T +
Sbjct: 82 KFLSFPFLVL---PLFLILLLFPNYVKLTIPYLFLYLLNGVMGSIMVGMDMFTETAITGN 138
Query: 260 LSLHHNSSIKII-IIGRDMYL 201
+ L I II ++ ++YL
Sbjct: 139 IFLIIRWGISIIAVLSHNIYL 159
>ref|NP_570232.1| SPV072 RNA polymerase-associated protein RAP94 [Swinepox virus]
gi|18448565|gb|AAL69811.1| SPV072 RNA
polymerase-associated protein RAP94 [Swinepox virus]
Length = 801
Score = 30.8 bits (68), Expect = 8.5
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = -2
Query: 380 VLLKSNFVHLVLPYFFSVMSIYTSFRFG 297
+ LKS FV+ +L Y++S+ S+Y FRFG
Sbjct: 691 IALKSLFVNNILKYYYSIPSLYV-FRFG 717
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,290,244
Number of Sequences: 1393205
Number of extensions: 9181434
Number of successful extensions: 27764
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27714
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
