Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012924A_C01 KMC012924A_c01
(466 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA05278.1| loxc homologue [Lycopersicon pimpinellifolium] 75 2e-23
pir||T07062 probable lipoxygenase (EC 1.13.11.12) (clone H1) - p... 75 3e-23
pir||T07408 lipoxygenase (EC 1.13.11.12) loxC, chloroplast - tom... 75 3e-23
gb|AAD31897.1|AF145479_1 lipoxygenase [Mesembryanthemum crystall... 75 5e-23
emb|CAD45187.1| lipoxygenase 2 [Hordeum vulgare subsp. vulgare] 70 2e-21
>emb|CAA05278.1| loxc homologue [Lycopersicon pimpinellifolium]
Length = 786
Score = 74.7 bits (182), Expect(2) = 2e-23
Identities = 34/56 (60%), Positives = 43/56 (76%)
Frame = -2
Query: 465 ILSTHSPDEEYIGEKMEPSWAENPVIKAAFARFRERLKKIEKIIDDRNENPKLKTQ 298
+LS HSPDEEYIGEK+EP WAE+PVI AAF F +LK++E +ID RN + KL +
Sbjct: 701 VLSNHSPDEEYIGEKIEPYWAEDPVINAAFEVFSGKLKELEGVIDARNNDSKLNNR 756
Score = 55.5 bits (132), Expect(2) = 2e-23
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = -3
Query: 302 HRNGAGVVPYELLKPFSKPGLTSMGVPCSISI 207
+RNGAGV+PYELLKPFS+PG+T GVP SISI
Sbjct: 755 NRNGAGVMPYELLKPFSEPGVTGKGVPYSISI 786
>pir||T07062 probable lipoxygenase (EC 1.13.11.12) (clone H1) - potato
gi|1495802|emb|CAA65268.1| 13-lipoxygenase [Solanum
tuberosum]
Length = 899
Score = 75.1 bits (183), Expect(2) = 3e-23
Identities = 35/56 (62%), Positives = 43/56 (76%)
Frame = -2
Query: 465 ILSTHSPDEEYIGEKMEPSWAENPVIKAAFARFRERLKKIEKIIDDRNENPKLKTQ 298
+LS HSPDEEYIGEK+EP WAE+PVI AAF F +LK++E IID RN + KL +
Sbjct: 814 VLSNHSPDEEYIGEKIEPYWAEDPVINAAFEVFSGKLKELEGIIDARNNDSKLSNR 869
Score = 54.3 bits (129), Expect(2) = 3e-23
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = -3
Query: 302 HRNGAGVVPYELLKPFSKPGLTSMGVPCSISI 207
+RNGAGV+PYELLKP+S+PG+T GVP SISI
Sbjct: 868 NRNGAGVMPYELLKPYSEPGVTGKGVPYSISI 899
>pir||T07408 lipoxygenase (EC 1.13.11.12) loxC, chloroplast - tomato
gi|1654138|gb|AAB65766.1| lipoxygenase
Length = 896
Score = 75.1 bits (183), Expect(2) = 3e-23
Identities = 35/56 (62%), Positives = 43/56 (76%)
Frame = -2
Query: 465 ILSTHSPDEEYIGEKMEPSWAENPVIKAAFARFRERLKKIEKIIDDRNENPKLKTQ 298
+LS HSPDEEYIGEK+EP WAE+PVI AAF F +LK++E IID RN + KL +
Sbjct: 811 VLSNHSPDEEYIGEKIEPYWAEDPVINAAFEVFSGKLKELEGIIDARNNDSKLNNR 866
Score = 54.3 bits (129), Expect(2) = 3e-23
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = -3
Query: 302 HRNGAGVVPYELLKPFSKPGLTSMGVPCSISI 207
+RNGAGV+PYELLKP+S+PG+T GVP SISI
Sbjct: 865 NRNGAGVMPYELLKPYSEPGVTGKGVPYSISI 896
>gb|AAD31897.1|AF145479_1 lipoxygenase [Mesembryanthemum crystallinum]
Length = 285
Score = 75.5 bits (184), Expect(2) = 5e-23
Identities = 33/55 (60%), Positives = 43/55 (78%)
Frame = -2
Query: 462 LSTHSPDEEYIGEKMEPSWAENPVIKAAFARFRERLKKIEKIIDDRNENPKLKTQ 298
LS HSPDEEYIG+++EPSWAE+P +K AF F +LK++EK ID RN + KLK +
Sbjct: 201 LSNHSPDEEYIGDQIEPSWAEDPTVKTAFDNFNGKLKELEKTIDARNADSKLKNR 255
Score = 53.1 bits (126), Expect(2) = 5e-23
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -3
Query: 305 RHRNGAGVVPYELLKPFSKPGLTSMGVPCSISI 207
++R GAG VPYELLKPFSK G+T MGVP SISI
Sbjct: 253 KNRYGAGTVPYELLKPFSKSGVTGMGVPNSISI 285
>emb|CAD45187.1| lipoxygenase 2 [Hordeum vulgare subsp. vulgare]
Length = 896
Score = 70.5 bits (171), Expect(2) = 2e-21
Identities = 32/56 (57%), Positives = 41/56 (73%)
Frame = -2
Query: 465 ILSTHSPDEEYIGEKMEPSWAENPVIKAAFARFRERLKKIEKIIDDRNENPKLKTQ 298
ILS+HSPDEEY+GE EP+W P++KAAF +F RLK+ E ID RN NP+ K +
Sbjct: 811 ILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNR 866
Score = 52.8 bits (125), Expect(2) = 2e-21
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = -3
Query: 305 RHRNGAGVVPYELLKPFSKPGLTSMGVPCSISI 207
++R GAG+VPYELLKPFS+PG+T G+P SISI
Sbjct: 864 KNRCGAGIVPYELLKPFSEPGVTGRGIPNSISI 896
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,349,970
Number of Sequences: 1393205
Number of extensions: 8515359
Number of successful extensions: 26754
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 26168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26726
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
