Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012921A_C01 KMC012921A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42266.1| putative glutamate receptor [Arabidopsis thaliana] 33 2.8
ref|NP_190716.1| putative glutamate receptor; protein id: At3g51... 33 2.8
ref|NP_031592.1| baculovirus inhibitor of apoptosis repeat conta... 32 3.7
ref|NP_721535.1| putative transporter, trans-membrane domain bac... 32 4.8
ref|NP_057336.1| baculoviral IAP repeat-containing 6 [Homo sapie... 32 4.8
>gb|AAO42266.1| putative glutamate receptor [Arabidopsis thaliana]
Length = 903
Score = 32.7 bits (73), Expect = 2.8
Identities = 19/31 (61%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -2
Query: 536 FLSFVDEKEEIVKTRSKR-RQMERISYRSTS 447
FLSFV EKEE K RS R RQ+E IS +S
Sbjct: 870 FLSFVKEKEEDAKARSSRERQLEDISANGSS 900
>ref|NP_190716.1| putative glutamate receptor; protein id: At3g51480.1 [Arabidopsis
thaliana] gi|11358646|pir||T45779 probable glutamate
receptor - Arabidopsis thaliana
gi|6572069|emb|CAB63012.1| putative glutamate receptor
[Arabidopsis thaliana]
Length = 1039
Score = 32.7 bits (73), Expect = 2.8
Identities = 19/31 (61%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -2
Query: 536 FLSFVDEKEEIVKTRSKR-RQMERISYRSTS 447
FLSFV EKEE K RS R RQ+E IS +S
Sbjct: 1006 FLSFVKEKEEDAKARSSRERQLEDISANGSS 1036
>ref|NP_031592.1| baculovirus inhibitor of apoptosis repeat containing
ubiquitin-conjugating enzyme; accccbaculoviral IAP
repeat-containing 6 [Mus musculus] gi|7513605|pir||T31067
BIR repeat containing ubiquitin-conjugating enzyme BRUCE
- mouse gi|3319990|emb|CAA76720.1| ubiquitin-conjugating
enzyme [Mus musculus]
Length = 4845
Score = 32.3 bits (72), Expect = 3.7
Identities = 20/49 (40%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Frame = -2
Query: 173 FNLHSL*QVSTII-FVTFLVHIYVTCSNLCMTVVYESGQQGAFATFNFL 30
F + S+ +S +I VTFLVH Y+TCS+ M+ GA A F L
Sbjct: 2834 FEVVSVSTISAVIESVTFLVHHYITCSDKVMSRSGSDSSAGARACFGGL 2882
>ref|NP_721535.1| putative transporter, trans-membrane domain bacteriocin immunity
protein [Streptococcus mutans UA159]
gi|24377526|gb|AAN58841.1|AE014951_12 putative
transporter, trans-membrane domain bacteriocin immunity
protein [Streptococcus mutans UA159]
Length = 246
Score = 32.0 bits (71), Expect = 4.8
Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 7/45 (15%)
Frame = -2
Query: 152 QVSTIIFVTFLVHIYVTCSNLCMTVVYE-------SGQQGAFATF 39
Q+S + TFLV I+++C +LC+ +Y+ +G G+F +F
Sbjct: 132 QLSLSLLTTFLVCIFLSCLHLCLAFIYQKANVTVVTGLIGSFLSF 176
>ref|NP_057336.1| baculoviral IAP repeat-containing 6 [Homo sapiens]
gi|12585192|sp|Q9NR09|BIR6_HUMAN Baculoviral IAP
repeat-containing protein 6 (Ubiquitin-conjugating
BIR-domain enzyme apollon)
gi|8489831|gb|AAF75772.1|AF265555_1 ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens]
Length = 4829
Score = 32.0 bits (71), Expect = 4.8
Identities = 20/49 (40%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Frame = -2
Query: 173 FNLHSL*QVSTII-FVTFLVHIYVTCSNLCMTVVYESGQQGAFATFNFL 30
F + S+ +S +I VTFLVH Y+TCS+ M+ GA A F L
Sbjct: 2820 FEVVSVSTISAVIESVTFLVHHYITCSDKVMSRSGSDSSVGARACFGGL 2868
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,166,585
Number of Sequences: 1393205
Number of extensions: 8000715
Number of successful extensions: 17380
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17369
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
