Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012883A_C01 KMC012883A_c01
(642 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK17065.1| fibronectin binding autolysin [Staphylococcus cap... 34 1.9
ref|NP_702836.1| hypothetical protein [Plasmodium falciparum 3D7... 25 9.1
>gb|AAK17065.1| fibronectin binding autolysin [Staphylococcus caprae]
Length = 1395
Score = 33.9 bits (76), Expect = 1.9
Identities = 24/73 (32%), Positives = 36/73 (48%)
Frame = +1
Query: 28 NNSYRLRNKA*ISQN*QVKASKVSGW*SSDKQNIIEINASGSSASITDKPLTAENTFHNR 207
N+ ++A I+Q KAS + + +K ++ N SG AS+ DK + + NR
Sbjct: 905 NSKATTADRAAITQT-SAKASNTNSTQTINKIAQVKANNSGIRASVFDKKAKSGAKYGNR 963
Query: 208 TMDITKLETENGN 246
T ITK TE N
Sbjct: 964 TYIITKQRTEGNN 976
>ref|NP_702836.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498252|emb|CAD49223.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2011
Score = 25.0 bits (53), Expect(2) = 9.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 210 HGYNKA*NRKWQSHRHYSNKRSKDH 284
HG+NK + K+ ++H NK + H
Sbjct: 1018 HGHNKYNDNKYNDNKHGDNKYNDKH 1042
Score = 25.0 bits (53), Expect(2) = 9.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 50 IKHKLVKINKLKHQKYQDGEVQTNK 124
I H +NK K KY+D + NK
Sbjct: 973 IHHDKYDVNKYKDNKYKDNKYDVNK 997
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,473,626
Number of Sequences: 1393205
Number of extensions: 11145923
Number of successful extensions: 24280
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24276
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
