Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012878A_C01 KMC012878A_c01
(878 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65998.1| putative dTDP-glucose 4-6-dehydratase [Arabidopsi... 560 e-158
ref|NP_563807.1| expressed protein; protein id: At1g08200.1, sup... 560 e-158
gb|AAK68820.1| similar to dihydroflavonol reductase [Arabidopsis... 560 e-158
ref|NP_180353.1| putative dTDP-glucose 4-6-dehydratase; protein ... 555 e-157
dbj|BAB85329.1| OJ1656_A11.18 [Oryza sativa (japonica cultivar-g... 526 e-148
>gb|AAM65998.1| putative dTDP-glucose 4-6-dehydratase [Arabidopsis thaliana]
Length = 389
Score = 560 bits (1442), Expect = e-158
Identities = 269/291 (92%), Positives = 279/291 (95%)
Frame = +3
Query: 3 IAPLTICMIGAGGFIGSHLCEKLMSETPHKVLALDVYSDKIKHLLEPDNLPWHGRIHFHR 182
I P+TICMIGAGGFIGSHLCEKLM+ETPHKVLALDVY+DKIKHLLEPD + W GRI FHR
Sbjct: 15 IKPMTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVQWAGRIQFHR 74
Query: 183 LNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL 362
+NIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL
Sbjct: 75 INIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL 134
Query: 363 IHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIER 542
IHFSTCEVYGKTIGSFLPKD PLRQDP +YVLKED SPCIFGSIEKQRWSYACAKQLIER
Sbjct: 135 IHFSTCEVYGKTIGSFLPKDHPLRQDPEFYVLKEDISPCIFGSIEKQRWSYACAKQLIER 194
Query: 543 LIYAEGAENNMEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVWACFSNNLLRGEPLKLVD 722
L+YAEGAEN +EFTIVRPFNWIGPRMDFIPGIDGPSEGVPRV ACFSNNLLR EPLKLVD
Sbjct: 195 LVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVD 254
Query: 723 GGESQRTFVYIKDAIEAVLLMIENPGRANGHIFNVGNPHNEVTVRQLAEMM 875
GGESQRTF+YIKDAIEAVLLMIENP RANGHIFNVGNP+NEVTVRQLAEMM
Sbjct: 255 GGESQRTFIYIKDAIEAVLLMIENPERANGHIFNVGNPNNEVTVRQLAEMM 305
>ref|NP_563807.1| expressed protein; protein id: At1g08200.1, supported by cDNA:
6892., supported by cDNA: gi_14596184 [Arabidopsis
thaliana] gi|25407031|pir||C86216 protein T23G18.6
[imported] - Arabidopsis thaliana
gi|6579211|gb|AAF18254.1|AC011438_16 T23G18.6
[Arabidopsis thaliana] gi|24899785|gb|AAN65107.1|
similar to dihydroflavonol reductase [Arabidopsis
thaliana]
Length = 389
Score = 560 bits (1442), Expect = e-158
Identities = 269/291 (92%), Positives = 279/291 (95%)
Frame = +3
Query: 3 IAPLTICMIGAGGFIGSHLCEKLMSETPHKVLALDVYSDKIKHLLEPDNLPWHGRIHFHR 182
I P+TICMIGAGGFIGSHLCEKLM+ETPHKVLALDVY+DKIKHLLEPD + W GRI FHR
Sbjct: 15 IKPMTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVQWAGRIQFHR 74
Query: 183 LNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL 362
+NIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL
Sbjct: 75 INIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL 134
Query: 363 IHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIER 542
IHFSTCEVYGKTIGSFLPKD PLRQDP +YVLKED SPCIFGSIEKQRWSYACAKQLIER
Sbjct: 135 IHFSTCEVYGKTIGSFLPKDHPLRQDPEFYVLKEDISPCIFGSIEKQRWSYACAKQLIER 194
Query: 543 LIYAEGAENNMEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVWACFSNNLLRGEPLKLVD 722
L+YAEGAEN +EFTIVRPFNWIGPRMDFIPGIDGPSEGVPRV ACFSNNLLR EPLKLVD
Sbjct: 195 LVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVD 254
Query: 723 GGESQRTFVYIKDAIEAVLLMIENPGRANGHIFNVGNPHNEVTVRQLAEMM 875
GGESQRTF+YIKDAIEAVLLMIENP RANGHIFNVGNP+NEVTVRQLAEMM
Sbjct: 255 GGESQRTFIYIKDAIEAVLLMIENPERANGHIFNVGNPNNEVTVRQLAEMM 305
>gb|AAK68820.1| similar to dihydroflavonol reductase [Arabidopsis thaliana]
Length = 389
Score = 560 bits (1442), Expect = e-158
Identities = 269/291 (92%), Positives = 279/291 (95%)
Frame = +3
Query: 3 IAPLTICMIGAGGFIGSHLCEKLMSETPHKVLALDVYSDKIKHLLEPDNLPWHGRIHFHR 182
I P+TICMIGAGGFIGSHLCEKLM+ETPHKVLALDVY+DKIKHLLEPD + W GRI FHR
Sbjct: 15 IKPMTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVQWAGRIQFHR 74
Query: 183 LNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL 362
+NIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL
Sbjct: 75 INIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL 134
Query: 363 IHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIER 542
IHFSTCEVYGKTIGSFLPKD PLRQDP +YVLKED SPCIFGSIEKQRWSYACAKQLIER
Sbjct: 135 IHFSTCEVYGKTIGSFLPKDHPLRQDPEFYVLKEDISPCIFGSIEKQRWSYACAKQLIER 194
Query: 543 LIYAEGAENNMEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVWACFSNNLLRGEPLKLVD 722
L+YAEGAEN +EFTIVRPFNWIGPRMDFIPGIDGPSEGVPRV ACFSNNLLR EPLKLVD
Sbjct: 195 LVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVD 254
Query: 723 GGESQRTFVYIKDAIEAVLLMIENPGRANGHIFNVGNPHNEVTVRQLAEMM 875
GGESQRTF+YIKDAIEAVLLMIENP RANGHIFNVGNP+NEVTVRQLAEMM
Sbjct: 255 GGESQRTFIYIKDAIEAVLLMIENPERANGHIFNVGNPNNEVTVRQLAEMM 305
>ref|NP_180353.1| putative dTDP-glucose 4-6-dehydratase; protein id: At2g27860.1,
supported by cDNA: 28205., supported by cDNA:
gi_13605496 [Arabidopsis thaliana]
gi|25407929|pir||G84677 probable dTDP-glucose
4-6-dehydratase [imported] - Arabidopsis thaliana
gi|3860247|gb|AAC73015.1| putative dTDP-glucose
4-6-dehydratase [Arabidopsis thaliana]
gi|13605497|gb|AAK32742.1|AF361574_1 At2g27860/F15K20.4
[Arabidopsis thaliana] gi|21555529|gb|AAM63878.1|
putative dTDP-glucose 4-6-dehydratase [Arabidopsis
thaliana] gi|24111293|gb|AAN46770.1| At2g27860/F15K20.4
[Arabidopsis thaliana]
Length = 389
Score = 555 bits (1431), Expect = e-157
Identities = 267/291 (91%), Positives = 277/291 (94%)
Frame = +3
Query: 3 IAPLTICMIGAGGFIGSHLCEKLMSETPHKVLALDVYSDKIKHLLEPDNLPWHGRIHFHR 182
I PLTICMIGAGGFIGSHLCEKL++ETPHKVLALDVY+DKIKHLLEPD + W GRI FHR
Sbjct: 15 IQPLTICMIGAGGFIGSHLCEKLLTETPHKVLALDVYNDKIKHLLEPDTVEWSGRIQFHR 74
Query: 183 LNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL 362
+NIKHDSRLEGL+KMADL INLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL
Sbjct: 75 INIKHDSRLEGLVKMADLIINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL 134
Query: 363 IHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIER 542
IHFSTCEVYGKTIGSFLPKD PLR DPA+YVLKED SPCIFGSIEKQRWSYACAKQLIER
Sbjct: 135 IHFSTCEVYGKTIGSFLPKDHPLRDDPAFYVLKEDISPCIFGSIEKQRWSYACAKQLIER 194
Query: 543 LIYAEGAENNMEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVWACFSNNLLRGEPLKLVD 722
L+YAEGAEN +EFTIVRPFNWIGPRMDFIPGIDGPSEGVPRV ACFSNNLLR EPLKLVD
Sbjct: 195 LVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVD 254
Query: 723 GGESQRTFVYIKDAIEAVLLMIENPGRANGHIFNVGNPHNEVTVRQLAEMM 875
GGESQRTFVYI DAIEAVLLMIENP RANGHIFNVGNP+NEVTVRQLAEMM
Sbjct: 255 GGESQRTFVYINDAIEAVLLMIENPERANGHIFNVGNPNNEVTVRQLAEMM 305
>dbj|BAB85329.1| OJ1656_A11.18 [Oryza sativa (japonica cultivar-group)]
Length = 398
Score = 526 bits (1354), Expect = e-148
Identities = 256/291 (87%), Positives = 270/291 (91%)
Frame = +3
Query: 3 IAPLTICMIGAGGFIGSHLCEKLMSETPHKVLALDVYSDKIKHLLEPDNLPWHGRIHFHR 182
IAPLTICMIGAGGFIGSHLCEKLM+ET H V A+DVY DKI+HL++P HGRI FHR
Sbjct: 23 IAPLTICMIGAGGFIGSHLCEKLMAETAHVVYAVDVYCDKIRHLVDPAPPHLHGRISFHR 82
Query: 183 LNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL 362
LNIK+DSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL
Sbjct: 83 LNIKNDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRL 142
Query: 363 IHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIER 542
IHFSTCEVYGKTIGSFLP D PLR++P +YVLKEDESPCIFG I KQRWSYACAKQLIER
Sbjct: 143 IHFSTCEVYGKTIGSFLPTDHPLRKEPEFYVLKEDESPCIFGPIVKQRWSYACAKQLIER 202
Query: 543 LIYAEGAENNMEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVWACFSNNLLRGEPLKLVD 722
LI+AEGAEN +EFTIVRPFNWIGPRMDFIPG+DGPSEGVPRV ACFSNNLLR EPLKLVD
Sbjct: 203 LIFAEGAENGLEFTIVRPFNWIGPRMDFIPGVDGPSEGVPRVLACFSNNLLRREPLKLVD 262
Query: 723 GGESQRTFVYIKDAIEAVLLMIENPGRANGHIFNVGNPHNEVTVRQLAEMM 875
GG+SQRTFVYIKDAIEAV LMIENP RANG IFNVGNP+NEVTVRQLAEMM
Sbjct: 263 GGQSQRTFVYIKDAIEAVHLMIENPARANGQIFNVGNPNNEVTVRQLAEMM 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 800,658,194
Number of Sequences: 1393205
Number of extensions: 18853797
Number of successful extensions: 75291
Number of sequences better than 10.0: 933
Number of HSP's better than 10.0 without gapping: 65242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73912
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47382100290
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
