Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012867A_C01 KMC012867A_c01
(706 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin) gi|62... 482 e-135
sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain (Beta-1 tubulin) gi|44... 482 e-135
sp|P46265|TBB3_ORYSA TUBULIN BETA CHAIN gi|493710|dbj|BAA06382.1... 481 e-135
gb|AAK09229.1|AC084320_16 beta-tubulin [Oryza sativa (japonica c... 481 e-135
pir||JC2511 beta-tubulin R2242 - rice 481 e-135
>sp|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin) gi|629840|pir||S43328 tubulin
beta-7 chain - maize gi|416149|gb|AAA19708.1| beta-7
tubulin
Length = 445
Score = 482 bits (1240), Expect = e-135
Identities = 233/234 (99%), Positives = 234/234 (99%)
Frame = -3
Query: 704 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL 525
GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL
Sbjct: 71 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL 130
Query: 524 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 345
QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190
Query: 344 QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLMSATMSGVTCCLRFPGQLNSDL 165
QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHL+SATMSGVTCCLRFPGQLNSDL
Sbjct: 191 QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDL 250
Query: 164 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAAD 3
RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAAD
Sbjct: 251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAAD 304
>sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain (Beta-1 tubulin) gi|4415990|gb|AAD20178.1|
beta-tubulin 1 [Eleusine indica]
Length = 445
Score = 482 bits (1240), Expect = e-135
Identities = 233/234 (99%), Positives = 234/234 (99%)
Frame = -3
Query: 704 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL 525
GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL
Sbjct: 71 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL 130
Query: 524 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 345
QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190
Query: 344 QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLMSATMSGVTCCLRFPGQLNSDL 165
QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHL+SATMSGVTCCLRFPGQLNSDL
Sbjct: 191 QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDL 250
Query: 164 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAAD 3
RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAAD
Sbjct: 251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAAD 304
>sp|P46265|TBB3_ORYSA TUBULIN BETA CHAIN gi|493710|dbj|BAA06382.1| beta-tubulin [Oryza
sativa (japonica cultivar-group)]
Length = 447
Score = 481 bits (1237), Expect = e-135
Identities = 232/234 (99%), Positives = 234/234 (99%)
Frame = -3
Query: 704 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL 525
GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL
Sbjct: 71 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL 130
Query: 524 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 345
QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190
Query: 344 QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLMSATMSGVTCCLRFPGQLNSDL 165
QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHL+SATMSGVTCCLRFPGQLNSDL
Sbjct: 191 QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDL 250
Query: 164 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAAD 3
RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD+KNMMCAAD
Sbjct: 251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAD 304
>gb|AAK09229.1|AC084320_16 beta-tubulin [Oryza sativa (japonica cultivar-group)]
Length = 444
Score = 481 bits (1237), Expect = e-135
Identities = 232/234 (99%), Positives = 234/234 (99%)
Frame = -3
Query: 704 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL 525
GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL
Sbjct: 71 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL 130
Query: 524 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 345
QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190
Query: 344 QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLMSATMSGVTCCLRFPGQLNSDL 165
QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHL+SATMSGVTCCLRFPGQLNSDL
Sbjct: 191 QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDL 250
Query: 164 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAAD 3
RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD+KNMMCAAD
Sbjct: 251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAD 304
>pir||JC2511 beta-tubulin R2242 - rice
Length = 444
Score = 481 bits (1237), Expect = e-135
Identities = 232/234 (99%), Positives = 234/234 (99%)
Frame = -3
Query: 704 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL 525
GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL
Sbjct: 71 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCL 130
Query: 524 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 345
QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 190
Query: 344 QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLMSATMSGVTCCLRFPGQLNSDL 165
QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHL+SATMSGVTCCLRFPGQLNSDL
Sbjct: 191 QLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDL 250
Query: 164 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAAD 3
RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD+KNMMCAAD
Sbjct: 251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAD 304
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 661,956,795
Number of Sequences: 1393205
Number of extensions: 15913758
Number of successful extensions: 73142
Number of sequences better than 10.0: 2090
Number of HSP's better than 10.0 without gapping: 61509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71195
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
