Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012849A_C01 KMC012849A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL24314.1| berberine bridge enzyme-like protein [Arabidopsis... 94 1e-18
ref|NP_199252.1| FAD-linked oxidoreductase family; protein id: A... 94 1e-18
dbj|BAB33033.1| CPRD2 [Vigna unguiculata] 89 4e-17
ref|NP_199251.1| FAD-linked oxidoreductase family; protein id: A... 88 6e-17
ref|NP_199253.1| FAD-linked oxidoreductase family; protein id: A... 87 1e-16
>gb|AAL24314.1| berberine bridge enzyme-like protein [Arabidopsis thaliana]
gi|23198322|gb|AAN15688.1| berberine bridge enzyme-like
protein [Arabidopsis thaliana]
Length = 542
Score = 94.0 bits (232), Expect = 1e-18
Identities = 45/65 (69%), Positives = 52/65 (79%), Gaps = 1/65 (1%)
Frame = -1
Query: 551 TPYVSSFPRGAYVNYRDLDLGINSKNSTS-YIQASAWGYRYYKDNFNRLVKIKTRVDLEN 375
TPYVSS PR AYVNYRDLDLG N NS S +I+A WG Y+KDNFNRLV+IK++VD +N
Sbjct: 470 TPYVSSNPRQAYVNYRDLDLGQNKDNSKSNFIEAKVWGANYFKDNFNRLVRIKSKVDPDN 529
Query: 374 VFRHE 360
FRHE
Sbjct: 530 FFRHE 534
>ref|NP_199252.1| FAD-linked oxidoreductase family; protein id: At5g44390.1,
supported by cDNA: gi_16648924 [Arabidopsis thaliana]
gi|10176894|dbj|BAB10124.1| berberine bridge enzyme-like
protein [Arabidopsis thaliana]
Length = 542
Score = 93.6 bits (231), Expect = 1e-18
Identities = 45/65 (69%), Positives = 52/65 (79%), Gaps = 1/65 (1%)
Frame = -1
Query: 551 TPYVSSFPRGAYVNYRDLDLGINSKNSTS-YIQASAWGYRYYKDNFNRLVKIKTRVDLEN 375
TPYVSS PR AYVNYRDLDLG N NS S +I+A WG Y+KDNFNRLV+IK++VD +N
Sbjct: 470 TPYVSSNPRQAYVNYRDLDLGQNKDNSKSNFIEAKIWGANYFKDNFNRLVRIKSKVDPDN 529
Query: 374 VFRHE 360
FRHE
Sbjct: 530 FFRHE 534
>dbj|BAB33033.1| CPRD2 [Vigna unguiculata]
Length = 535
Score = 89.0 bits (219), Expect = 4e-17
Identities = 40/70 (57%), Positives = 50/70 (71%)
Frame = -1
Query: 548 PYVSSFPRGAYVNYRDLDLGINSKNSTSYIQASAWGYRYYKDNFNRLVKIKTRVDLENVF 369
PYVS+ PR AYVNYRDLD+G+N+ TSY QAS WG +Y+ +NF RL +KT+VD N F
Sbjct: 464 PYVSNSPRAAYVNYRDLDIGVNNNGYTSYHQASIWGLKYFSNNFKRLATVKTKVDPHNFF 523
Query: 368 RHEPEHSTTS 339
R+E T S
Sbjct: 524 RNEQSIPTLS 533
>ref|NP_199251.1| FAD-linked oxidoreductase family; protein id: At5g44380.1,
supported by cDNA: gi_20260455 [Arabidopsis thaliana]
gi|10176893|dbj|BAB10123.1| berberine bridge enzyme-like
protein [Arabidopsis thaliana]
gi|20260456|gb|AAM13126.1| berberine bridge enzyme-like
protein [Arabidopsis thaliana]
Length = 541
Score = 88.2 bits (217), Expect = 6e-17
Identities = 42/64 (65%), Positives = 50/64 (77%), Gaps = 1/64 (1%)
Frame = -1
Query: 548 PYVSSFPRGAYVNYRDLDLGINSKNS-TSYIQASAWGYRYYKDNFNRLVKIKTRVDLENV 372
PYVSS PR AYVNYRDLD G N N+ ++I+A WG +Y+K NF+RLVKIKT+VD EN
Sbjct: 470 PYVSSNPRQAYVNYRDLDFGQNKNNAKVNFIEAKIWGPKYFKGNFDRLVKIKTKVDPENF 529
Query: 371 FRHE 360
FRHE
Sbjct: 530 FRHE 533
>ref|NP_199253.1| FAD-linked oxidoreductase family; protein id: At5g44400.1,
supported by cDNA: gi_18176301 [Arabidopsis thaliana]
gi|18176302|gb|AAL60019.1| putative berberine bridge
enzyme [Arabidopsis thaliana]
Length = 537
Score = 87.0 bits (214), Expect = 1e-16
Identities = 43/65 (66%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Frame = -1
Query: 551 TPYVSSFPRGAYVNYRDLDLGINSKNSTSYI-QASAWGYRYYKDNFNRLVKIKTRVDLEN 375
TPYVSS PR AYVNYRDLDLG N+K+ + I QA WG Y+K+NFNRL+ IK +VD EN
Sbjct: 466 TPYVSSNPREAYVNYRDLDLGRNTKDVKTCIKQAQVWGANYFKNNFNRLMMIKAKVDPEN 525
Query: 374 VFRHE 360
FRHE
Sbjct: 526 FFRHE 530
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,799,170
Number of Sequences: 1393205
Number of extensions: 9131929
Number of successful extensions: 21407
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 20683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21357
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
