Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012845A_C01 KMC012845A_c01
(1119 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9M4D8|DCAM_VICFA S-adenosylmethionine decarboxylase proenzym... 309 6e-83
gb|AAL89723.1|AF488307_1 S-adenosylmethionine decarboxylase [Gly... 303 3e-81
sp|Q43820|DCAM_PEA S-adenosylmethionine decarboxylase proenzyme ... 300 3e-80
sp|O04009|DCAM_TOBAC S-adenosylmethionine decarboxylase proenzym... 286 4e-76
pir||T01934 adenosylmethionine decarboxylase (EC 4.1.1.50) - com... 286 4e-76
>sp|Q9M4D8|DCAM_VICFA S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
[Contains: S-adenosylmethionine decarboxylase alpha
chain; S-adenosylmethionine decarboxylase beta chain]
gi|7209279|emb|CAB76966.1| S-adenosylmethionine
decarboxylase [Vicia faba]
Length = 353
Score = 309 bits (791), Expect = 6e-83
Identities = 158/190 (83%), Positives = 170/190 (89%)
Frame = +1
Query: 544 MAGSAIGFEGYEKRLEITFFPPGLFSDPEGKGLRALTKSQLDEILAPAECTIVSSLANDD 723
MA SAIGFEG+EKRLEI+F PGLFSDP+G+GLR+LTKSQLDEILAPAECTIVSSLAN+D
Sbjct: 1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANED 60
Query: 724 VDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAEFVSLNVKCRDGTPRGSFIFP 903
VDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAE +SL+V+ T RGSFIFP
Sbjct: 61 VDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAESISLDVRAVRYT-RGSFIFP 119
Query: 904 GAQSFPHRSFSEEVAILDGYFGKLGSGSSAYIMGGSDSEQKWHVYSASAESVRPCDSFTH 1083
GAQSFPHR FSEEVA+LDG+FGKLGSGS AYIMGGSD Q WHVY ASA+SV P DS
Sbjct: 120 GAQSFPHRHFSEEVAVLDGFFGKLGSGSKAYIMGGSDEAQNWHVYCASADSVSPADSVYT 179
Query: 1084 LEMCMTGLDR 1113
LEMCMTGLDR
Sbjct: 180 LEMCMTGLDR 189
>gb|AAL89723.1|AF488307_1 S-adenosylmethionine decarboxylase [Glycine max]
Length = 355
Score = 303 bits (776), Expect = 3e-81
Identities = 154/191 (80%), Positives = 168/191 (87%)
Frame = +1
Query: 541 AMAGSAIGFEGYEKRLEITFFPPGLFSDPEGKGLRALTKSQLDEILAPAECTIVSSLAND 720
AMA SAIGFEG+EKRLEI+FF PGLF+DPEG+GLRALTKSQL EIL PA CTIVSSL ND
Sbjct: 2 AMAVSAIGFEGFEKRLEISFFQPGLFADPEGRGLRALTKSQLGEILTPAACTIVSSLKND 61
Query: 721 DVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAEFVSLNVKCRDGTPRGSFIF 900
+VDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILK AE +SLNVK + T RGSFIF
Sbjct: 62 NVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKFAEMLSLNVKSVNYT-RGSFIF 120
Query: 901 PGAQSFPHRSFSEEVAILDGYFGKLGSGSSAYIMGGSDSEQKWHVYSASAESVRPCDSFT 1080
P AQ +PHR+FSEEVAILDGYFGKLG+GS+AYI+GG D Q WHVYSASA+SV CD+
Sbjct: 121 PSAQPYPHRNFSEEVAILDGYFGKLGAGSNAYILGGQDKAQNWHVYSASADSVTQCDNVY 180
Query: 1081 HLEMCMTGLDR 1113
LEMCMTGLDR
Sbjct: 181 TLEMCMTGLDR 191
>sp|Q43820|DCAM_PEA S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
[Contains: S-adenosylmethionine decarboxylase alpha
chain; S-adenosylmethionine decarboxylase beta chain]
gi|7436596|pir||T06515 probable adenosylmethionine
decarboxylase (EC 4.1.1.50) - garden pea
gi|1421752|gb|AAB03865.1| S-adenosylmethionine
decarboxylase [Pisum sativum]
Length = 353
Score = 300 bits (768), Expect = 3e-80
Identities = 152/190 (80%), Positives = 169/190 (88%)
Frame = +1
Query: 544 MAGSAIGFEGYEKRLEITFFPPGLFSDPEGKGLRALTKSQLDEILAPAECTIVSSLANDD 723
MA SAIGFEG+EKRLEI+F PGLFSDP+G+GLR+LTKSQLDEILAPAECTIVSSLAN+D
Sbjct: 1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANED 60
Query: 724 VDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAEFVSLNVKCRDGTPRGSFIFP 903
VDSYVLSESSLFVYAYK+IIKTCGTTKLLL+IPPILKLA+ +SLNV+ T RGSFIFP
Sbjct: 61 VDSYVLSESSLFVYAYKLIIKTCGTTKLLLSIPPILKLADSISLNVRSVRYT-RGSFIFP 119
Query: 904 GAQSFPHRSFSEEVAILDGYFGKLGSGSSAYIMGGSDSEQKWHVYSASAESVRPCDSFTH 1083
GAQSFPHR FSEEVA+LDG+FGKLGSGS AYI+GGSD Q WH+Y AS++SV P S
Sbjct: 120 GAQSFPHRHFSEEVAVLDGFFGKLGSGSMAYILGGSDEAQNWHIYCASSDSVSPEGSVYT 179
Query: 1084 LEMCMTGLDR 1113
LEMCMTGLDR
Sbjct: 180 LEMCMTGLDR 189
>sp|O04009|DCAM_TOBAC S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
[Contains: S-adenosylmethionine decarboxylase alpha
chain; S-adenosylmethionine decarboxylase beta chain]
gi|1917013|gb|AAB51301.1| S-adenosylmethionine
decarboxylase [Nicotiana tabacum]
Length = 361
Score = 286 bits (732), Expect = 4e-76
Identities = 147/192 (76%), Positives = 163/192 (84%)
Frame = +1
Query: 538 TAMAGSAIGFEGYEKRLEITFFPPGLFSDPEGKGLRALTKSQLDEILAPAECTIVSSLAN 717
+A+ SAIGFEG+EKRLEI+FF PGLF+DP GKGLR+L+K+QLDEIL PAECTIV SL+N
Sbjct: 3 SALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSN 62
Query: 718 DDVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAEFVSLNVKCRDGTPRGSFI 897
DDVDSYVLSESSLFVY+YKIIIKTCGTTKLLLAIPPILKLAE +SL V+ T RGSFI
Sbjct: 63 DDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRYT-RGSFI 121
Query: 898 FPGAQSFPHRSFSEEVAILDGYFGKLGSGSSAYIMGGSDSEQKWHVYSASAESVRPCDSF 1077
FPGAQSFPHR FSEEVA+LDGYFGKL +GS A IMG D QKWHVYSASA ++ D
Sbjct: 122 FPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKAQKWHVYSASAGPIQSNDPV 181
Query: 1078 THLEMCMTGLDR 1113
LEMCMTGLDR
Sbjct: 182 YTLEMCMTGLDR 193
>pir||T01934 adenosylmethionine decarboxylase (EC 4.1.1.50) - common tobacco
gi|2687584|gb|AAB88854.1| S-adenosylmethionine
decarboxylase [Nicotiana tabacum]
Length = 361
Score = 286 bits (732), Expect = 4e-76
Identities = 147/192 (76%), Positives = 163/192 (84%)
Frame = +1
Query: 538 TAMAGSAIGFEGYEKRLEITFFPPGLFSDPEGKGLRALTKSQLDEILAPAECTIVSSLAN 717
+A+ SAIGFEG+EKRLEI+FF PGLF+DP GKGLR+L+K+QLDEIL PAECTIV SL+N
Sbjct: 3 SALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSN 62
Query: 718 DDVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAEFVSLNVKCRDGTPRGSFI 897
DDVDSYVLSESSLFVY+YKIIIKTCGTTKLLLAIPPILKLAE +SL V+ T RGSFI
Sbjct: 63 DDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRYT-RGSFI 121
Query: 898 FPGAQSFPHRSFSEEVAILDGYFGKLGSGSSAYIMGGSDSEQKWHVYSASAESVRPCDSF 1077
FPGAQSFPHR FSEEVA+LDGYFGKL +GS A IMG D QKWHVYSASA ++ D
Sbjct: 122 FPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKAQKWHVYSASAGPIQSNDPV 181
Query: 1078 THLEMCMTGLDR 1113
LEMCMTGLDR
Sbjct: 182 YTLEMCMTGLDR 193
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 971,346,227
Number of Sequences: 1393205
Number of extensions: 22378582
Number of successful extensions: 76764
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 64275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73871
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 67811039634
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
