Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012839A_C01 KMC012839A_c01
(673 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM98176.1| unknown protein [Arabidopsis thaliana] 42 0.002
ref|NP_196437.1| hypothetical protein; protein id: At5g08200.1 [... 42 0.002
ref|NP_197704.2| unknown protein; protein id: At5g23130.1, suppo... 38 0.14
dbj|BAB09830.1| gene_id:MYJ24.12~unknown protein [Arabidopsis th... 38 0.14
ref|NP_710567.1| conserved hypothetical protein [Leptospira inte... 37 0.24
>gb|AAM98176.1| unknown protein [Arabidopsis thaliana]
Length = 409
Score = 42.0 bits (97), Expect(2) = 0.002
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Frame = -3
Query: 548 WPPAQTGV*NPDL--QAAISKPIFDGLPIPISGRRSKAALD 432
WP ++ + PDL AAI+ IFDGLP P++GRR+K ALD
Sbjct: 370 WPTSKWSL-KPDLLTPAAITSSIFDGLPKPLTGRRNKTALD 409
Score = 21.2 bits (43), Expect(2) = 0.002
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 607 KSSSASSLREQEKNNS 560
KSSSASSL++ + N++
Sbjct: 348 KSSSASSLQDPDGNSN 363
>ref|NP_196437.1| hypothetical protein; protein id: At5g08200.1 [Arabidopsis
thaliana] gi|11291586|pir||T50505 hypothetical protein
T22D6.140 - Arabidopsis thaliana
gi|8346557|emb|CAB93721.1| hypothetical protein
[Arabidopsis thaliana]
Length = 407
Score = 42.0 bits (97), Expect(2) = 0.002
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Frame = -3
Query: 548 WPPAQTGV*NPDL--QAAISKPIFDGLPIPISGRRSKAALD 432
WP ++ + PDL AAI+ IFDGLP P++GRR+K ALD
Sbjct: 368 WPTSKWSL-KPDLLTPAAITSSIFDGLPKPLTGRRNKTALD 407
Score = 21.2 bits (43), Expect(2) = 0.002
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 607 KSSSASSLREQEKNNS 560
KSSSASSL++ + N++
Sbjct: 346 KSSSASSLQDPDGNSN 361
>ref|NP_197704.2| unknown protein; protein id: At5g23130.1, supported by cDNA:
gi_17979294, supported by cDNA: gi_21281230 [Arabidopsis
thaliana] gi|17979295|gb|AAL49873.1| unknown protein
[Arabidopsis thaliana] gi|21281231|gb|AAM44993.1|
unknown protein [Arabidopsis thaliana]
Length = 397
Score = 37.7 bits (86), Expect = 0.14
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Frame = -3
Query: 548 WPPAQTGV*NPDL--QAAISKPIFDGLPIPISGRRSKAALD 432
WP ++ + P+L Q A++ IFDGLP P++GRR+K A+D
Sbjct: 358 WPTSKWTL-KPELLTQVAMASSIFDGLPKPLTGRRNKKAVD 397
>dbj|BAB09830.1| gene_id:MYJ24.12~unknown protein [Arabidopsis thaliana]
Length = 402
Score = 37.7 bits (86), Expect = 0.14
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Frame = -3
Query: 548 WPPAQTGV*NPDL--QAAISKPIFDGLPIPISGRRSKAALD 432
WP ++ + P+L Q A++ IFDGLP P++GRR+K A+D
Sbjct: 363 WPTSKWTL-KPELLTQVAMASSIFDGLPKPLTGRRNKKAVD 402
>ref|NP_710567.1| conserved hypothetical protein [Leptospira interrogans serovar lai
str. 56601] gi|24193783|gb|AAN47585.1|AE011225_11
conserved hypothetical protein [Leptospira interrogans
serovar lai str. 56601]
Length = 741
Score = 37.0 bits (84), Expect = 0.24
Identities = 35/110 (31%), Positives = 49/110 (43%), Gaps = 11/110 (10%)
Frame = -3
Query: 509 QAAISKPIFDGLPIPISGRRSKAALD*CKTAK*FLLAQIIF*HYTNINCNKIQIFW---- 342
QA IS IF G +P G R + K FLL ++ + + +KI++F
Sbjct: 298 QALISYEIFTGRILPKIGLRQEWK----KINLGFLLITFLYFIISTLGFSKIELFLIGSY 353
Query: 341 -------FSKPKKRE*TVKKRKKLQD*DIYSGHRITEGLIASPKEKLQQP 213
F K +E V K L I + I E +I+SPKEKLQ+P
Sbjct: 354 VYNVSRTFLLKKNKELRVAKNSILNS--IITTENIAENVISSPKEKLQKP 401
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,296,872
Number of Sequences: 1393205
Number of extensions: 12526154
Number of successful extensions: 31740
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 30805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31733
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29421376608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
