Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012822A_C01 KMC012822A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199189.1| beta-ketoacyl-CoA synthase; protein id: At5g437... 159 1e-38
gb|AAK59535.1| putative beta-ketoacyl-CoA synthase [Arabidopsis ... 159 1e-38
ref|NP_171620.2| fatty acid elongase 3-ketoacyl-CoA synthase 1; ... 159 1e-38
gb|AAC99312.1| fatty acid elongase 3-ketoacyl-CoA synthase 1 [Ar... 159 1e-38
emb|CAC01441.1| putative fatty acid elongase [Zea mays] 154 4e-37
>ref|NP_199189.1| beta-ketoacyl-CoA synthase; protein id: At5g43760.1, supported by
cDNA: gi_14334713, supported by cDNA: gi_15983490
[Arabidopsis thaliana] gi|10177945|dbj|BAB11304.1|
beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
gi|15983491|gb|AAL11613.1|AF424620_1 AT5g43760/MQD19_11
[Arabidopsis thaliana] gi|23297625|gb|AAN12994.1|
beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
Length = 529
Score = 159 bits (403), Expect = 1e-38
Identities = 75/100 (75%), Positives = 87/100 (87%)
Frame = -3
Query: 508 HAGGRAVLDEMQKNLELSEWHMEPSRMTLHRFGNTSSSSLWYELAYTEAKARVGKGDRV* 329
HAGGRAVLDE++KNL+LSEWHMEPSRMTL+RFGNTSSSSLWYELAY+EAK R+ +GDR
Sbjct: 419 HAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGNTSSSSLWYELAYSEAKGRIKRGDRTW 478
Query: 328 QIAFGSGFKCNSAVWKAVRDMPELGDWRGNPWDDSIDKYP 209
QIAFGSGFKCNSAVWKA+R + + D + NPW D ID +P
Sbjct: 479 QIAFGSGFKCNSAVWKALRTIDPM-DEKTNPWIDEIDDFP 517
>gb|AAK59535.1| putative beta-ketoacyl-CoA synthase [Arabidopsis thaliana]
Length = 529
Score = 159 bits (403), Expect = 1e-38
Identities = 75/100 (75%), Positives = 87/100 (87%)
Frame = -3
Query: 508 HAGGRAVLDEMQKNLELSEWHMEPSRMTLHRFGNTSSSSLWYELAYTEAKARVGKGDRV* 329
HAGGRAVLDE++KNL+LSEWHMEPSRMTL+RFGNTSSSSLWYELAY+EAK R+ +GDR
Sbjct: 419 HAGGRAVLDEIEKNLDLSEWHMEPSRMTLNRFGNTSSSSLWYELAYSEAKGRIKRGDRTW 478
Query: 328 QIAFGSGFKCNSAVWKAVRDMPELGDWRGNPWDDSIDKYP 209
QIAFGSGFKCNSAVWKA+R + + D + NPW D ID +P
Sbjct: 479 QIAFGSGFKCNSAVWKALRTIDPM-DEKTNPWIDEIDDFP 517
>ref|NP_171620.2| fatty acid elongase 3-ketoacyl-CoA synthase 1; protein id:
At1g01120.1, supported by cDNA: gi_18377663, supported
by cDNA: gi_20465992 [Arabidopsis thaliana]
gi|25406715|pir||F86141 protein T25K16.11 [imported] -
Arabidopsis thaliana
gi|6715643|gb|AAF26470.1|AC007323_11 T25K16.11
[Arabidopsis thaliana] gi|18377664|gb|AAL66982.1|
putative fatty acid elongase 3-ketoacyl-CoA synthase 1
[Arabidopsis thaliana] gi|20465993|gb|AAM20218.1|
putative fatty acid elongase 3-ketoacyl-CoA synthase 1
[Arabidopsis thaliana]
Length = 528
Score = 159 bits (403), Expect = 1e-38
Identities = 76/100 (76%), Positives = 85/100 (85%)
Frame = -3
Query: 508 HAGGRAVLDEMQKNLELSEWHMEPSRMTLHRFGNTSSSSLWYELAYTEAKARVGKGDRV* 329
HAGGRAVLDE+QKNL+L +WHMEPSRMTLHRFGNTSSSSLWYE+AYTEAK RV GDR+
Sbjct: 425 HAGGRAVLDEVQKNLDLKDWHMEPSRMTLHRFGNTSSSSLWYEMAYTEAKGRVKAGDRLW 484
Query: 328 QIAFGSGFKCNSAVWKAVRDMPELGDWRGNPWDDSIDKYP 209
QIAFGSGFKCNSAVWKA+R + + GN W SID+YP
Sbjct: 485 QIAFGSGFKCNSAVWKALRPV-STEEMTGNAWAGSIDQYP 523
>gb|AAC99312.1| fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis
thaliana]
Length = 520
Score = 159 bits (403), Expect = 1e-38
Identities = 76/100 (76%), Positives = 85/100 (85%)
Frame = -3
Query: 508 HAGGRAVLDEMQKNLELSEWHMEPSRMTLHRFGNTSSSSLWYELAYTEAKARVGKGDRV* 329
HAGGRAVLDE+QKNL+L +WHMEPSRMTLHRFGNTSSSSLWYE+AYTEAK RV GDR+
Sbjct: 417 HAGGRAVLDEVQKNLDLKDWHMEPSRMTLHRFGNTSSSSLWYEMAYTEAKGRVKAGDRLW 476
Query: 328 QIAFGSGFKCNSAVWKAVRDMPELGDWRGNPWDDSIDKYP 209
QIAFGSGFKCNSAVWKA+R + + GN W SID+YP
Sbjct: 477 QIAFGSGFKCNSAVWKALRPV-STEEMTGNAWAGSIDQYP 515
>emb|CAC01441.1| putative fatty acid elongase [Zea mays]
Length = 513
Score = 154 bits (390), Expect = 4e-37
Identities = 73/100 (73%), Positives = 85/100 (85%)
Frame = -3
Query: 508 HAGGRAVLDEMQKNLELSEWHMEPSRMTLHRFGNTSSSSLWYELAYTEAKARVGKGDRV* 329
HAGGRAVLDE++KNLEL++WHMEPSRMTL+RFGNTSSSSLWYELAYTEAK R+ K DR+
Sbjct: 404 HAGGRAVLDELEKNLELTDWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIRKRDRIW 463
Query: 328 QIAFGSGFKCNSAVWKAVRDMPELGDWRGNPWDDSIDKYP 209
QIAFGSGFKCNSAVWKA+R + + +PW D ID +P
Sbjct: 464 QIAFGSGFKCNSAVWKALRTVNPAKE--KSPWMDEIDNFP 501
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,316,686
Number of Sequences: 1393205
Number of extensions: 12027120
Number of successful extensions: 41662
Number of sequences better than 10.0: 558
Number of HSP's better than 10.0 without gapping: 37491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41343
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
