Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012818A_C01 KMC012818A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565895.1| expressed protein; protein id: At2g38740.1, sup... 147 9e-35
pir||G84808 hypothetical protein At2g38740 [imported] - Arabidop... 147 9e-35
gb|AAL86484.1|AC077693_23 putative beta-phosphoglucomutase [Oryz... 123 2e-27
dbj|BAA85442.1| ESTs AU070998(R10588),D46106(S10554) correspond ... 94 2e-18
ref|NP_793369.1| HAD-superfamily hydrolase [Pseudomonas syringae... 75 8e-13
>ref|NP_565895.1| expressed protein; protein id: At2g38740.1, supported by cDNA:
40283., supported by cDNA: gi_15912256, supported by
cDNA: gi_19547992 [Arabidopsis thaliana]
gi|15912257|gb|AAL08262.1| At2g38740/T6A23.6
[Arabidopsis thaliana] gi|19547993|gb|AAL87360.1|
At2g38740/T6A23.6 [Arabidopsis thaliana]
gi|20197393|gb|AAC67344.2| expressed protein
[Arabidopsis thaliana] gi|21593582|gb|AAM65549.1|
putative beta-phosphoglucomutase [Arabidopsis thaliana]
Length = 244
Score = 147 bits (371), Expect = 9e-35
Identities = 69/91 (75%), Positives = 77/91 (83%)
Frame = -1
Query: 576 FEAVIIGGECEHAKPHPEPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGIATR 397
F+AVI+G ECE KPHP PYLK LE L SK+HT VFEDS+SGIKAGVAAGMPVIG+ T
Sbjct: 151 FQAVILGSECEFPKPHPGPYLKALEVLNVSKEHTLVFEDSISGIKAGVAAGMPVIGLTTG 210
Query: 396 NPEDLLMEAKPAFLIKDYADPKLWAALEELD 304
NP LLM+AKPAFLI++YADPKLWA LEELD
Sbjct: 211 NPASLLMQAKPAFLIENYADPKLWAVLEELD 241
>pir||G84808 hypothetical protein At2g38740 [imported] - Arabidopsis thaliana
Length = 219
Score = 147 bits (371), Expect = 9e-35
Identities = 69/91 (75%), Positives = 77/91 (83%)
Frame = -1
Query: 576 FEAVIIGGECEHAKPHPEPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGIATR 397
F+AVI+G ECE KPHP PYLK LE L SK+HT VFEDS+SGIKAGVAAGMPVIG+ T
Sbjct: 126 FQAVILGSECEFPKPHPGPYLKALEVLNVSKEHTLVFEDSISGIKAGVAAGMPVIGLTTG 185
Query: 396 NPEDLLMEAKPAFLIKDYADPKLWAALEELD 304
NP LLM+AKPAFLI++YADPKLWA LEELD
Sbjct: 186 NPASLLMQAKPAFLIENYADPKLWAVLEELD 216
>gb|AAL86484.1|AC077693_23 putative beta-phosphoglucomutase [Oryza sativa (japonica
cultivar-group)]
Length = 245
Score = 123 bits (308), Expect = 2e-27
Identities = 56/96 (58%), Positives = 74/96 (76%)
Frame = -1
Query: 576 FEAVIIGGECEHAKPHPEPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGIATR 397
F ++IG EC+ AKP P+PYLK LE + AS DHTF+FEDS SGI+AGVAA +PV+G+ TR
Sbjct: 146 FPVLVIGSECDRAKPFPDPYLKALELIGASPDHTFIFEDSASGIRAGVAANVPVVGLTTR 205
Query: 396 NPEDLLMEAKPAFLIKDYADPKLWAALEELDKTNAS 289
NPE +L +A + LIKD+ DPKL + LEE++ T A+
Sbjct: 206 NPEKVLQDAGASLLIKDFQDPKLLSILEEIEPTVAA 241
>dbj|BAA85442.1| ESTs AU070998(R10588),D46106(S10554) correspond to a region of the
predicted gene.~similar to Arabidopsis thaliana
chromosome II BAC T6A23; unknown protein (AC005499)
[Oryza sativa (japonica cultivar-group)]
gi|25553537|dbj|BAC24813.1| OSJNBa0004I20.8 [Oryza
sativa (japonica cultivar-group)]
Length = 303
Score = 93.6 bits (231), Expect = 2e-18
Identities = 47/93 (50%), Positives = 61/93 (65%)
Frame = -1
Query: 567 VIIGGECEHAKPHPEPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGIATRNPE 388
V +C+ KP PEPYL+ L L AS HT VFEDSV G++AGVAAGMPVI +A E
Sbjct: 203 VAAADDCDLPKPSPEPYLRALSLLGASPRHTLVFEDSVVGVQAGVAAGMPVIAVAEEARE 262
Query: 387 DLLMEAKPAFLIKDYADPKLWAALEELDKTNAS 289
++ A + +I+DY D KLWAAL++L A+
Sbjct: 263 AKVVAAGASLVIRDYKDHKLWAALDKLQAAAAA 295
>ref|NP_793369.1| HAD-superfamily hydrolase [Pseudomonas syringae pv. tomato str.
DC3000] gi|28853998|gb|AAO57064.1| HAD-superfamily
hydrolase [Pseudomonas syringae pv. tomato str. DC3000]
Length = 218
Score = 74.7 bits (182), Expect = 8e-13
Identities = 36/91 (39%), Positives = 52/91 (56%)
Frame = -1
Query: 576 FEAVIIGGECEHAKPHPEPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGIATR 397
FEA++IGGE + KPHP PYL LE L D FEDS++G+++ AAG+ G+ +
Sbjct: 128 FEAIVIGGELQRGKPHPIPYLTALELLGVKADQAIAFEDSLAGVQSAHAAGIHTFGVLSG 187
Query: 396 NPEDLLMEAKPAFLIKDYADPKLWAALEELD 304
E L +A +I+D+ LW L+ D
Sbjct: 188 LQEHQLRQAGARDVIRDFNADALWQFLQTAD 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,195,879
Number of Sequences: 1393205
Number of extensions: 9081331
Number of successful extensions: 22612
Number of sequences better than 10.0: 328
Number of HSP's better than 10.0 without gapping: 22249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22584
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
