Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012817A_C01 KMC012817A_c01
(667 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199723.1| putative protein; protein id: At5g49120.1 [Arab... 60 3e-08
ref|NP_567534.1| expressed protein; protein id: At4g17670.1, sup... 42 0.006
pir||F71446 hypothetical protein - Arabidopsis thaliana gi|22451... 42 0.006
gb|AAM65981.1| unknown [Arabidopsis thaliana] 40 0.022
ref|NP_566023.1| expressed protein; protein id: At2g44670.1 [Ara... 37 0.31
>ref|NP_199723.1| putative protein; protein id: At5g49120.1 [Arabidopsis thaliana]
gi|10176945|dbj|BAB10094.1|
gb|AAF17687.1~gene_id:K20J1.9~similar to unknown protein
[Arabidopsis thaliana]
Length = 150
Score = 60.1 bits (144), Expect = 3e-08
Identities = 30/67 (44%), Positives = 43/67 (63%), Gaps = 1/67 (1%)
Frame = -1
Query: 523 RGDRAFCSEECRCKQIFMDEEETVQTENCSMAAMRPTSSASSSVSSSSSTPHR-KKGSRN 347
+GDRAFCS ECR KQ+ MDEEE+++ E CS+ ++ S ++ P R ++ RN
Sbjct: 89 KGDRAFCSVECRSKQMIMDEEESLRREYCSLMDVK-----KKKFDSPATAPSRYRRDPRN 143
Query: 346 RRGGFAY 326
+ GGFAY
Sbjct: 144 QAGGFAY 150
>ref|NP_567534.1| expressed protein; protein id: At4g17670.1, supported by cDNA:
6709. [Arabidopsis thaliana] gi|17381090|gb|AAL36357.1|
unknown protein [Arabidopsis thaliana]
gi|21436245|gb|AAM51261.1| unknown protein [Arabidopsis
thaliana]
Length = 159
Score = 42.4 bits (98), Expect = 0.006
Identities = 29/66 (43%), Positives = 37/66 (55%), Gaps = 1/66 (1%)
Frame = -1
Query: 523 RGDRAFCSEECRCKQIFMDE-EETVQTENCSMAAMRPTSSASSSVSSSSSTPHRKKGSRN 347
RGD FCSEECR +QI DE +E Q+ + S+ AMR + SSSS+P R +
Sbjct: 97 RGDTPFCSEECREEQIERDEAKEKKQSLSTSVKAMR-----RNEKRSSSSSPTRSRNYAF 151
Query: 346 RRGGFA 329
R G A
Sbjct: 152 RTGTVA 157
>pir||F71446 hypothetical protein - Arabidopsis thaliana
gi|2245125|emb|CAB10547.1| hypothetical protein
[Arabidopsis thaliana] gi|7268519|emb|CAB78770.1|
hypothetical protein [Arabidopsis thaliana]
Length = 144
Score = 42.4 bits (98), Expect = 0.006
Identities = 29/66 (43%), Positives = 37/66 (55%), Gaps = 1/66 (1%)
Frame = -1
Query: 523 RGDRAFCSEECRCKQIFMDE-EETVQTENCSMAAMRPTSSASSSVSSSSSTPHRKKGSRN 347
RGD FCSEECR +QI DE +E Q+ + S+ AMR + SSSS+P R +
Sbjct: 82 RGDTPFCSEECREEQIERDEAKEKKQSLSTSVKAMR-----RNEKRSSSSSPTRSRNYAF 136
Query: 346 RRGGFA 329
R G A
Sbjct: 137 RTGTVA 142
>gb|AAM65981.1| unknown [Arabidopsis thaliana]
Length = 159
Score = 40.4 bits (93), Expect = 0.022
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 523 RGDRAFCSEECRCKQIFMDE-EETVQTENCSMAAMRPTSSASSSVSSSSS 377
RGD FCSEECR +QI DE +E Q+ + S+ AMR SS S + S
Sbjct: 97 RGDTPFCSEECREEQIERDEAKEKKQSLSTSVKAMRRNEKRXSSSSPTRS 146
>ref|NP_566023.1| expressed protein; protein id: At2g44670.1 [Arabidopsis thaliana]
gi|7485541|pir||T01594 hypothetical protein At2g44670
[imported] - Arabidopsis thaliana
gi|3341687|gb|AAC27469.1| expressed protein [Arabidopsis
thaliana] gi|13272435|gb|AAK17156.1|AF325088_1 unknown
protein [Arabidopsis thaliana]
gi|15081775|gb|AAK82542.1| At2g44670/F16B22.16
[Arabidopsis thaliana] gi|21593625|gb|AAM65592.1|
unknown [Arabidopsis thaliana]
gi|24797042|gb|AAN64533.1| At2g44670/F16B22.16
[Arabidopsis thaliana]
Length = 93
Score = 36.6 bits (83), Expect = 0.31
Identities = 17/48 (35%), Positives = 28/48 (57%)
Frame = -1
Query: 523 RGDRAFCSEECRCKQIFMDEEETVQTENCSMAAMRPTSSASSSVSSSS 380
RGD+AFCS ECR +QI DE + + + S + + +S S + ++
Sbjct: 37 RGDKAFCSNECREEQIESDEAKERKWKKSSRSLRKNSSETKESAAGNT 84
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,255,866
Number of Sequences: 1393205
Number of extensions: 12994041
Number of successful extensions: 73923
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 50409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67762
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
