Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012812A_C01 KMC012812A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182045.1| cis-Golgi SNARE protein, putative; protein id: ... 152 2e-36
emb|CAB71130.1| hypothetical protein [Cicer arietinum] 74 1e-12
ref|NP_563985.1| cis-Golgi SNARE protein, putative; protein id: ... 67 1e-10
gb|AAH45246.1| Similar to golgi SNAP receptor complex member 1 [... 62 5e-09
ref|NP_058090.1| golgi SNAP receptor complex member 1; cis-Golgi... 59 5e-08
>ref|NP_182045.1| cis-Golgi SNARE protein, putative; protein id: At2g45200.1,
supported by cDNA: gi_13898894 [Arabidopsis thaliana]
gi|11132048|sp|O22151|GS12_ARATH Golgi SNARE 12 protein
(AtGOS12) (Golgi SNAP receptor complex member 1-2)
gi|25408932|pir||F84887 probable cis-Golgi SNARE protein
[imported] - Arabidopsis thaliana
gi|2583133|gb|AAB82642.1| putative cis-Golgi SNARE
protein [Arabidopsis thaliana]
gi|13898895|gb|AAK48905.1|AF357529_1 Golgi SNARE 12
protein [Arabidopsis thaliana]
Length = 239
Score = 152 bits (385), Expect = 2e-36
Identities = 79/101 (78%), Positives = 90/101 (88%)
Frame = -2
Query: 555 DDISDFKTSGSMSPRMPLLRERAAIPGSISHIDDVISQAQATRSVLGSQRALFGDVQGKV 376
DDIS++K SGSMSP + +LRERA+I GSISHIDDVI QAQATR+VLGSQR+LF DVQGKV
Sbjct: 134 DDISEYKASGSMSPGVQVLRERASIHGSISHIDDVIGQAQATRAVLGSQRSLFSDVQGKV 193
Query: 375 KVLGDQFPLIRSLLGSIRRKRSRDTLILSAVIAACTTSSLI 253
K LGD+FP+IR LLGSI+RKRSRDTLILSAVIAACT +I
Sbjct: 194 KNLGDKFPVIRGLLGSIKRKRSRDTLILSAVIAACTLFLII 234
>emb|CAB71130.1| hypothetical protein [Cicer arietinum]
Length = 188
Score = 73.9 bits (180), Expect = 1e-12
Identities = 41/101 (40%), Positives = 60/101 (58%), Gaps = 6/101 (5%)
Frame = -2
Query: 555 DDISDFKTS------GSMSPRMPLLRERAAIPGSISHIDDVISQAQATRSVLGSQRALFG 394
DD +F + GS S + LL+ERA+I S +D VISQAQAT L QR+ FG
Sbjct: 77 DDFKEFDRTRLDLEEGSGSEQQTLLKERASISRSTGQMDTVISQAQATLGALVFQRSTFG 136
Query: 393 DVQGKVKVLGDQFPLIRSLLGSIRRKRSRDTLILSAVIAAC 271
+ K+ + + P + ++L +I+RK+S DT+ILS V + C
Sbjct: 137 GINSKLSNVSSRLPTVNNILSAIKRKKSMDTIILSLVGSVC 177
>ref|NP_563985.1| cis-Golgi SNARE protein, putative; protein id: At1g15880.1,
supported by cDNA: gi_12083259, supported by cDNA:
gi_13898892, supported by cDNA: gi_15294143, supported
by cDNA: gi_20147266 [Arabidopsis thaliana]
gi|27805476|sp|Q9LMP7|GS11_ARATH Golgi SNARE 11 protein
(AtGOS11) (Golgi SNAP receptor complex member 1-1)
gi|25511639|pir||C86293 Golgi SNARE 11 protein -
Arabidopsis thaliana
gi|8927666|gb|AAF82157.1|AC034256_21 Contains similarity
to GOS28/P28 protein from Homo sapiens gb|AF047438.
ESTs gb|F14225, gb|AA395297, gb|BE038320 come from this
gene. [Arabidopsis thaliana]
gi|12083260|gb|AAG48789.1|AF332426_1 unknown protein
[Arabidopsis thaliana]
gi|13898893|gb|AAK48904.1|AF357528_1 Golgi SNARE 11
protein [Arabidopsis thaliana]
gi|15294144|gb|AAK95249.1|AF410263_1 At1g15880/F7H2_20
[Arabidopsis thaliana] gi|20147267|gb|AAM10347.1|
At1g15880/F7H2_20 [Arabidopsis thaliana]
Length = 223
Score = 67.4 bits (163), Expect = 1e-10
Identities = 33/79 (41%), Positives = 50/79 (62%)
Frame = -2
Query: 504 LLRERAAIPGSISHIDDVISQAQATRSVLGSQRALFGDVQGKVKVLGDQFPLIRSLLGSI 325
L++E I + + +D VISQAQAT L QR+ FG + K+ + + P + ++L +I
Sbjct: 135 LIKEHMGINRNTAQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAI 194
Query: 324 RRKRSRDTLILSAVIAACT 268
+RK+S DT+ILS V A CT
Sbjct: 195 KRKKSMDTIILSLVAAVCT 213
>gb|AAH45246.1| Similar to golgi SNAP receptor complex member 1 [Xenopus laevis]
Length = 251
Score = 62.0 bits (149), Expect = 5e-09
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Frame = -2
Query: 552 DISDFKTSGSMSPRMP--LLRERAAIPGSISHIDDVISQAQATRSVLGSQRALFGDVQGK 379
DI +K+ ++ R L+E + S I++ IS A AT+ + SQR + +Q +
Sbjct: 146 DIESYKSGSGVNNRRTELFLKEHEHLRSSDRLIEETISIAMATKENMTSQRGMMKSIQSR 205
Query: 378 VKVLGDQFPLIRSLLGSIRRKRSRDTLILSAVIAACTTSSLI 253
V L ++FP + SL+ I ++ RD+LIL AV+ CT L+
Sbjct: 206 VNTLANRFPALNSLIQRINLRKRRDSLILGAVVGICTILMLL 247
>ref|NP_058090.1| golgi SNAP receptor complex member 1; cis-Golgi SNARE; expressed
sequence BB145494 [Mus musculus]
gi|11132188|sp|O88630|GS28_MOUSE 28 kDa Golgi SNARE
protein (Golgi SNAP receptor complex member 1) (28 kDa
cis-Golgi SNARE p28) (GOS-28) gi|3421373|gb|AAC32189.1|
28 kDa cis-Golgi SNARE [Mus musculus]
Length = 250
Score = 58.5 bits (140), Expect = 5e-08
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Frame = -2
Query: 552 DISDFKTSGSMSPRMP--LLRERAAIPGSISHIDDVISQAQATRSVLGSQRALFGDVQGK 379
DI +K+ ++ R L+E + S I++ IS A AT+ + SQR + + K
Sbjct: 145 DIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSK 204
Query: 378 VKVLGDQFPLIRSLLGSIRRKRSRDTLILSAVIAACTTSSLI 253
+ L ++FP + SL+ I ++ RD+LIL VI CT L+
Sbjct: 205 MNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLL 246
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,806,947
Number of Sequences: 1393205
Number of extensions: 10459526
Number of successful extensions: 28195
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 26875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28102
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
