Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012776A_C01 KMC012776A_c01
(848 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN03619.1|AF406816_1 sphingolipid long chain base delta 8 de... 207 2e-52
gb|AAL23580.1| delta-6-desaturase [Echium gentianoides] 202 4e-51
gb|AAL23581.1| delta-6-desaturase [Echium pitardii var. pitardii] 201 1e-50
gb|AAC49700.1| delta 6 desaturase [Borago officinalis] 198 1e-49
gb|AAD01410.1| delta 6-desaturase [Borago officinalis] 198 1e-49
>gb|AAN03619.1|AF406816_1 sphingolipid long chain base delta 8 desaturase [Aquilegia
vulgaris]
Length = 446
Score = 207 bits (526), Expect = 2e-52
Identities = 91/115 (79%), Positives = 101/115 (87%)
Frame = -3
Query: 846 ASVYVGPPTAHDWFEKQTHGTLDVSCSPWMDWFHGGLQFQVEHHLFPRLPRCHLRKISPL 667
A YVGPP +DWFEKQT G D+SCS WMDWFHGGLQFQVEHHLFPRLPRCHLRKISP
Sbjct: 332 AHTYVGPPPCNDWFEKQTKGPFDISCSTWMDWFHGGLQFQVEHHLFPRLPRCHLRKISPF 391
Query: 666 VKDLCKKHXLPYNCVSFWKANVLTLRTLRNAALQARDLSNPVPKNLVWEAVNTHG 502
VK+LC+KH LPY VSF++AN +T+ TLRNAALQARDL+NP+PKNLVWEAVNTHG
Sbjct: 392 VKELCRKHNLPYISVSFFEANKMTIATLRNAALQARDLTNPIPKNLVWEAVNTHG 446
>gb|AAL23580.1| delta-6-desaturase [Echium gentianoides]
Length = 448
Score = 202 bits (515), Expect = 4e-51
Identities = 90/115 (78%), Positives = 100/115 (86%)
Frame = -3
Query: 846 ASVYVGPPTAHDWFEKQTHGTLDVSCSPWMDWFHGGLQFQVEHHLFPRLPRCHLRKISPL 667
ASVYVG P +DWFEKQT GTLD+SC WMDWFHGGLQFQVEHHLFP+LPRCHLRKISP
Sbjct: 334 ASVYVGQPKGNDWFEKQTCGTLDISCPSWMDWFHGGLQFQVEHHLFPKLPRCHLRKISPF 393
Query: 666 VKDLCKKHXLPYNCVSFWKANVLTLRTLRNAALQARDLSNPVPKNLVWEAVNTHG 502
V +LCKKH L YNC SF +AN +TLRTLR+ ALQARDL+ P+PKNLVWEA+NTHG
Sbjct: 394 VMELCKKHNLSYNCASFSEANEMTLRTLRDTALQARDLTKPLPKNLVWEALNTHG 448
>gb|AAL23581.1| delta-6-desaturase [Echium pitardii var. pitardii]
Length = 448
Score = 201 bits (511), Expect = 1e-50
Identities = 90/115 (78%), Positives = 99/115 (85%)
Frame = -3
Query: 846 ASVYVGPPTAHDWFEKQTHGTLDVSCSPWMDWFHGGLQFQVEHHLFPRLPRCHLRKISPL 667
ASVYVG P DWFEKQT GTLD+SC WMDWFHGGLQFQVEHHLFP+LPRCHLRKISP
Sbjct: 334 ASVYVGQPKGIDWFEKQTCGTLDISCPSWMDWFHGGLQFQVEHHLFPKLPRCHLRKISPF 393
Query: 666 VKDLCKKHXLPYNCVSFWKANVLTLRTLRNAALQARDLSNPVPKNLVWEAVNTHG 502
V +LCKKH L YNC SF +AN +TLRTLR+ ALQARDL+ P+PKNLVWEA+NTHG
Sbjct: 394 VMELCKKHNLSYNCASFSQANEMTLRTLRDTALQARDLTKPLPKNLVWEALNTHG 448
>gb|AAC49700.1| delta 6 desaturase [Borago officinalis]
Length = 448
Score = 198 bits (503), Expect = 1e-49
Identities = 86/115 (74%), Positives = 101/115 (87%)
Frame = -3
Query: 846 ASVYVGPPTAHDWFEKQTHGTLDVSCSPWMDWFHGGLQFQVEHHLFPRLPRCHLRKISPL 667
+SVYVG P ++WFEKQT GTLD+SC PWMDWFHGGLQFQ+EHHLFP++PRC+LRKISP
Sbjct: 334 SSVYVGKPKGNNWFEKQTDGTLDISCPPWMDWFHGGLQFQIEHHLFPKMPRCNLRKISPY 393
Query: 666 VKDLCKKHXLPYNCVSFWKANVLTLRTLRNAALQARDLSNPVPKNLVWEAVNTHG 502
V +LCKKH LPYN SF KAN +TLRTLRN ALQARD++ P+PKNLVWEA++THG
Sbjct: 394 VIELCKKHNLPYNYASFSKANEMTLRTLRNTALQARDITKPLPKNLVWEALHTHG 448
>gb|AAD01410.1| delta 6-desaturase [Borago officinalis]
Length = 448
Score = 198 bits (503), Expect = 1e-49
Identities = 86/115 (74%), Positives = 101/115 (87%)
Frame = -3
Query: 846 ASVYVGPPTAHDWFEKQTHGTLDVSCSPWMDWFHGGLQFQVEHHLFPRLPRCHLRKISPL 667
+SVYVG P ++WFEKQT GTLD+SC PWMDWFHGGLQFQ+EHHLFP++PRC+LRKISP
Sbjct: 334 SSVYVGKPKGNNWFEKQTDGTLDISCPPWMDWFHGGLQFQIEHHLFPKMPRCNLRKISPY 393
Query: 666 VKDLCKKHXLPYNCVSFWKANVLTLRTLRNAALQARDLSNPVPKNLVWEAVNTHG 502
V +LCKKH LPYN SF KAN +TLRTLRN ALQARD++ P+PKNLVWEA++THG
Sbjct: 394 VIELCKKHNLPYNYASFSKANEMTLRTLRNTALQARDITKPLPKNLVWEALHTHG 448
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 721,950,232
Number of Sequences: 1393205
Number of extensions: 16002750
Number of successful extensions: 47726
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 46037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47668
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44594917920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
