Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012752A_C01 KMC012752A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42383.1| unknown protein [Arabidopsis thaliana] gi|289509... 196 1e-49
ref|NP_568381.1| putative protein; protein id: At5g19850.1 [Arab... 191 4e-48
dbj|BAC06928.1| hypothetical protein~similar to Arabidopsis thal... 183 1e-45
gb|ZP_00108288.1| hypothetical protein [Nostoc punctiforme] 135 3e-31
ref|ZP_00072559.1| hypothetical protein [Trichodesmium erythraeu... 133 1e-30
>dbj|BAC42383.1| unknown protein [Arabidopsis thaliana] gi|28950929|gb|AAO63388.1|
At5g19850 [Arabidopsis thaliana]
Length = 370
Score = 196 bits (498), Expect = 1e-49
Identities = 87/109 (79%), Positives = 100/109 (90%)
Frame = -1
Query: 508 TDELVQIILSPGLEPGAVEVFLEFICYSGGPLPEELLPLVKCPVLIAWGDKDPWEPIEMG 329
TDELV+ IL PGLEPGAV+VFLEFICYSGGPLPE+LLPLVKCPVLIAWG+KDPWEPIE+G
Sbjct: 259 TDELVETILRPGLEPGAVDVFLEFICYSGGPLPEDLLPLVKCPVLIAWGEKDPWEPIELG 318
Query: 328 RNYGNFDSVEDFIVLPNVGHCPQDEAPDLVNPLVESFVARHAKSSSGAS 182
R Y NFD+VEDF+VLP+ GHCPQDE P++VNPL+ESFVARH KS++ S
Sbjct: 319 RAYSNFDAVEDFVVLPDAGHCPQDEKPEMVNPLIESFVARHRKSNTSIS 367
>ref|NP_568381.1| putative protein; protein id: At5g19850.1 [Arabidopsis thaliana]
Length = 359
Score = 191 bits (485), Expect = 4e-48
Identities = 84/101 (83%), Positives = 95/101 (93%)
Frame = -1
Query: 508 TDELVQIILSPGLEPGAVEVFLEFICYSGGPLPEELLPLVKCPVLIAWGDKDPWEPIEMG 329
TDELV+ IL PGLEPGAV+VFLEFICYSGGPLPE+LLPLVKCPVLIAWG+KDPWEPIE+G
Sbjct: 259 TDELVEAILRPGLEPGAVDVFLEFICYSGGPLPEDLLPLVKCPVLIAWGEKDPWEPIELG 318
Query: 328 RNYGNFDSVEDFIVLPNVGHCPQDEAPDLVNPLVESFVARH 206
R Y NFD+VEDF+VLP+ GHCPQDE P++VNPL+ESFVARH
Sbjct: 319 RAYSNFDAVEDFVVLPDAGHCPQDEKPEMVNPLIESFVARH 359
>dbj|BAC06928.1| hypothetical protein~similar to Arabidopsis thaliana
chromosome5,At5g19850 [Oryza sativa (japonica
cultivar-group)]
Length = 349
Score = 183 bits (464), Expect = 1e-45
Identities = 79/101 (78%), Positives = 92/101 (90%)
Frame = -1
Query: 505 DELVQIILSPGLEPGAVEVFLEFICYSGGPLPEELLPLVKCPVLIAWGDKDPWEPIEMGR 326
+ + I+ PGL+PGAV+VFLEFICYSGGPLPEELLP VKCPVL+AWG+KDPWEP+E+GR
Sbjct: 249 ESVKNILCQPGLDPGAVDVFLEFICYSGGPLPEELLPRVKCPVLVAWGEKDPWEPVELGR 308
Query: 325 NYGNFDSVEDFIVLPNVGHCPQDEAPDLVNPLVESFVARHA 203
Y +FD+VEDF+VLPNVGHCPQDEAPDLVNPLVESFV RH+
Sbjct: 309 AYASFDTVEDFVVLPNVGHCPQDEAPDLVNPLVESFVTRHS 349
>gb|ZP_00108288.1| hypothetical protein [Nostoc punctiforme]
Length = 300
Score = 135 bits (340), Expect = 3e-31
Identities = 60/98 (61%), Positives = 73/98 (74%)
Frame = -1
Query: 508 TDELVQIILSPGLEPGAVEVFLEFICYSGGPLPEELLPLVKCPVLIAWGDKDPWEPIEMG 329
TDELV I+ SP +PGAV VFL F YS GPLPE+LLPL+ CP +I WG DPWEPI++G
Sbjct: 197 TDELVDILTSPASDPGAVAVFLAFTSYSTGPLPEDLLPLLPCPAIILWGTADPWEPIKLG 256
Query: 328 RNYGNFDSVEDFIVLPNVGHCPQDEAPDLVNPLVESFV 215
R NF V+ FI L VGHCPQDEAP+LVNP++ ++
Sbjct: 257 RELANFPQVQKFIPLEGVGHCPQDEAPELVNPILLDWI 294
>ref|ZP_00072559.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 293
Score = 133 bits (335), Expect = 1e-30
Identities = 54/98 (55%), Positives = 77/98 (78%)
Frame = -1
Query: 508 TDELVQIILSPGLEPGAVEVFLEFICYSGGPLPEELLPLVKCPVLIAWGDKDPWEPIEMG 329
TDEL+ ++L P + GAV++F+ F YS GPLPE+LLP++ C +I WG++DPWE IE+G
Sbjct: 188 TDELIDLLLKPAKDEGAVDIFVAFTGYSQGPLPEDLLPILPCSAIILWGEEDPWENIELG 247
Query: 328 RNYGNFDSVEDFIVLPNVGHCPQDEAPDLVNPLVESFV 215
+ + NF +VE FI LP VGHCPQDEAP+LVNP+++ ++
Sbjct: 248 KEFANFKNVEKFIPLPGVGHCPQDEAPELVNPILQEWI 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,341,418
Number of Sequences: 1393205
Number of extensions: 10421373
Number of successful extensions: 28097
Number of sequences better than 10.0: 213
Number of HSP's better than 10.0 without gapping: 26639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27870
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
