Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012744A_C01 KMC012744A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F96767 proteinase IV F2P9.14 [imported] - Arabidopsis thali... 137 9e-32
gb|AAF24059.1|AF114385_1 putative protease SppA [Arabidopsis tha... 137 9e-32
ref|NP_565077.1| SppA protease IV (SppA); protein id: At1g73990.... 137 9e-32
ref|NP_335169.1| protease IV [Mycobacterium tuberculosis CDC1551... 44 8e-04
ref|NP_215238.1| sppA [Mycobacterium tuberculosis H37Rv] gi|7435... 44 8e-04
>pir||F96767 proteinase IV F2P9.14 [imported] - Arabidopsis thaliana
gi|12325146|gb|AAG52522.1|AC016662_16 putative protease
IV; 48713-44371 [Arabidopsis thaliana]
Length = 677
Score = 137 bits (344), Expect = 9e-32
Identities = 68/107 (63%), Positives = 87/107 (80%)
Frame = -1
Query: 506 KDAVSHGLVDAIGGLSRAIAIAKMKANIPQDTQARIVELSRPSPSLPEILSGLGNSIIGV 327
KDA S GL+DA+GGLSRAIAIAK KANIP + + +VELSRPS SLP+ILSG+G+S+IGV
Sbjct: 568 KDAHSRGLIDAVGGLSRAIAIAKQKANIPLNKKVTLVELSRPSTSLPDILSGIGSSVIGV 627
Query: 326 DRTLNELVQDFTFSDGVQARMDGIVFQKLEGYPYSNPILTLIKDYLS 186
DRTL L+ + T ++GVQARMDGI+FQ+L + PI+ ++KDYLS
Sbjct: 628 DRTLKGLLDELTITEGVQARMDGIMFQQLGRDSLATPIIDMLKDYLS 674
>gb|AAF24059.1|AF114385_1 putative protease SppA [Arabidopsis thaliana]
Length = 680
Score = 137 bits (344), Expect = 9e-32
Identities = 68/107 (63%), Positives = 87/107 (80%)
Frame = -1
Query: 506 KDAVSHGLVDAIGGLSRAIAIAKMKANIPQDTQARIVELSRPSPSLPEILSGLGNSIIGV 327
KDA S GL+DA+GGLSRAIAIAK KANIP + + +VELSRPS SLP+ILSG+G+S+IGV
Sbjct: 571 KDAHSRGLIDAVGGLSRAIAIAKQKANIPLNKKVTLVELSRPSTSLPDILSGIGSSVIGV 630
Query: 326 DRTLNELVQDFTFSDGVQARMDGIVFQKLEGYPYSNPILTLIKDYLS 186
DRTL L+ + T ++GVQARMDGI+FQ+L + PI+ ++KDYLS
Sbjct: 631 DRTLKGLLDELTITEGVQARMDGIMFQQLGRDSLATPIIDMLKDYLS 677
>ref|NP_565077.1| SppA protease IV (SppA); protein id: At1g73990.1, supported by
cDNA: gi_6690269 [Arabidopsis thaliana]
gi|23306358|gb|AAN17406.1| Unknown protein [Arabidopsis
thaliana] gi|28058917|gb|AAO29968.1| Unknown protein
[Arabidopsis thaliana]
Length = 388
Score = 137 bits (344), Expect = 9e-32
Identities = 68/107 (63%), Positives = 87/107 (80%)
Frame = -1
Query: 506 KDAVSHGLVDAIGGLSRAIAIAKMKANIPQDTQARIVELSRPSPSLPEILSGLGNSIIGV 327
KDA S GL+DA+GGLSRAIAIAK KANIP + + +VELSRPS SLP+ILSG+G+S+IGV
Sbjct: 279 KDAHSRGLIDAVGGLSRAIAIAKQKANIPLNKKVTLVELSRPSTSLPDILSGIGSSVIGV 338
Query: 326 DRTLNELVQDFTFSDGVQARMDGIVFQKLEGYPYSNPILTLIKDYLS 186
DRTL L+ + T ++GVQARMDGI+FQ+L + PI+ ++KDYLS
Sbjct: 339 DRTLKGLLDELTITEGVQARMDGIMFQQLGRDSLATPIIDMLKDYLS 385
>ref|NP_335169.1| protease IV [Mycobacterium tuberculosis CDC1551]
gi|13880283|gb|AAK44983.1| protease IV [Mycobacterium
tuberculosis CDC1551]
Length = 539
Score = 44.3 bits (103), Expect = 8e-04
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 16/75 (21%)
Frame = -1
Query: 503 DAVSHGLVDAIGGLSRAIAIAKMKANIPQDTQARIV--------ELSRPSP-------SL 369
DA+ GLVD +GGL A+ AK+ A + +DT+ RIV ++ RP P SL
Sbjct: 444 DALDRGLVDELGGLRTAVRRAKVLAGLDEDTEVRIVSYPGSSLWDMVRPRPSSRPAAASL 503
Query: 368 PEILSG-LGNSIIGV 327
P+ + L SI+G+
Sbjct: 504 PDAMGALLARSIVGI 518
>ref|NP_215238.1| sppA [Mycobacterium tuberculosis H37Rv] gi|7435909|pir||G70644
probable sppA protein - Mycobacterium tuberculosis
(strain H37RV) gi|1806192|emb|CAB06448.1| sppA
[Mycobacterium tuberculosis H37Rv]
Length = 623
Score = 44.3 bits (103), Expect = 8e-04
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 16/75 (21%)
Frame = -1
Query: 503 DAVSHGLVDAIGGLSRAIAIAKMKANIPQDTQARIV--------ELSRPSP-------SL 369
DA+ GLVD +GGL A+ AK+ A + +DT+ RIV ++ RP P SL
Sbjct: 528 DALDRGLVDELGGLRTAVRRAKVLAGLDEDTEVRIVSYPGSSLWDMVRPRPSSRPAAASL 587
Query: 368 PEILSG-LGNSIIGV 327
P+ + L SI+G+
Sbjct: 588 PDAMGALLARSIVGI 602
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,503,330
Number of Sequences: 1393205
Number of extensions: 9687181
Number of successful extensions: 20875
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 20467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20871
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
