Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012722A_C01 KMC012722A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175129.1| hypothetical protein; protein id: At1g45150.1 [... 54 1e-06
>ref|NP_175129.1| hypothetical protein; protein id: At1g45150.1 [Arabidopsis
thaliana] gi|7767671|gb|AAF69168.1|AC007915_20 F27F5.22
[Arabidopsis thaliana]
Length = 687
Score = 53.9 bits (128), Expect = 1e-06
Identities = 22/39 (56%), Positives = 29/39 (73%)
Frame = -1
Query: 539 RDEGVALLERTGPYFVPERYTFEHMPIDAMRGQIFNASR 423
R+E + LLE+TG Y PERYT EH PID +RG+++N R
Sbjct: 647 REEAMGLLEKTGVYTGPERYTLEHRPIDVLRGEVYNTCR 685
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,402,191
Number of Sequences: 1393205
Number of extensions: 8586305
Number of successful extensions: 17242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17234
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
