Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012698A_C01 KMC012698A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176678.1| unknown protein; protein id: At1g64980.1 [Arabi... 157 4e-57
dbj|BAC20854.1| hypothetical protein~similar to Oryza sativa chr... 134 1e-44
gb|AAK39572.1|AC025296_7 unknown protein [Oryza sativa] 133 1e-30
ref|ZP_00114641.1| hypothetical protein [Synechococcus sp. WH 8102] 90 3e-25
ref|NP_437086.1| conserved hypothetical protein [Sinorhizobium m... 81 3e-23
>ref|NP_176678.1| unknown protein; protein id: At1g64980.1 [Arabidopsis thaliana]
gi|25373164|pir||D96673 hypothetical protein F13O11.28
[imported] - Arabidopsis thaliana
gi|5042435|gb|AAD38274.1|AC006193_30 Unknown protein
[Arabidopsis thaliana]
Length = 259
Score = 157 bits (396), Expect(2) = 4e-57
Identities = 71/100 (71%), Positives = 84/100 (84%)
Frame = +1
Query: 100 NGNVPSPLPNGDGNTKQPFKIFVGYDPREDIAFQVCRHSILKRSTVPVEIIPIKQSDLRK 279
NG+V S N + K+PF+IFVGYDPRED+A+QVC HSI KRS++PVEI PI QSDLRK
Sbjct: 5 NGDVKSETCNNGSSEKKPFRIFVGYDPREDLAYQVCHHSITKRSSIPVEITPIIQSDLRK 64
Query: 280 TGLYWREKNQFESTEFSFTRFLTPELANHQGWAMFVDCDF 399
GLYWRE+ Q ESTEFSF+RFLTP L+++QGWAMFVDCDF
Sbjct: 65 KGLYWRERGQLESTEFSFSRFLTPHLSDYQGWAMFVDCDF 104
Score = 86.3 bits (212), Expect(2) = 4e-57
Identities = 40/43 (93%), Positives = 41/43 (95%)
Frame = +2
Query: 398 FLYLADIKELIDLIEDKYAIMCVQHDYAPKETTKMDGAVQTVY 526
FLYLADIKEL DLI+DKYAIMCVQHDY PKETTKMDGAVQTVY
Sbjct: 104 FLYLADIKELTDLIDDKYAIMCVQHDYTPKETTKMDGAVQTVY 146
>dbj|BAC20854.1| hypothetical protein~similar to Oryza sativa chromosome 10,
OSJNBa0076F20.4 [Oryza sativa (japonica cultivar-group)]
Length = 285
Score = 134 bits (336), Expect(2) = 1e-44
Identities = 59/90 (65%), Positives = 73/90 (80%)
Frame = +1
Query: 130 GDGNTKQPFKIFVGYDPREDIAFQVCRHSILKRSTVPVEIIPIKQSDLRKTGLYWREKNQ 309
GD + F++FVGYD REDIA++VCR S+L+RS+VPV +IPI Q +LR GLYWRE+
Sbjct: 19 GDVQAAETFRVFVGYDSREDIAYRVCRRSLLQRSSVPVAVIPIVQQELRSAGLYWRERGP 78
Query: 310 FESTEFSFTRFLTPELANHQGWAMFVDCDF 399
ESTEFSFTRFLTP LA ++GWA+FVDCDF
Sbjct: 79 TESTEFSFTRFLTPHLAGYRGWALFVDCDF 108
Score = 67.4 bits (163), Expect(2) = 1e-44
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +2
Query: 398 FLYLADIKELIDLIEDKYAIMCVQHDYAPKETTKMDGAVQTVY 526
FL++AD+ EL + + +YA++CV HDYAPKE TKMDGAVQTVY
Sbjct: 108 FLFVADVAELARMADPRYAVLCVHHDYAPKEATKMDGAVQTVY 150
>gb|AAK39572.1|AC025296_7 unknown protein [Oryza sativa]
Length = 268
Score = 133 bits (334), Expect = 1e-30
Identities = 57/96 (59%), Positives = 77/96 (79%)
Frame = +1
Query: 139 NTKQPFKIFVGYDPREDIAFQVCRHSILKRSTVPVEIIPIKQSDLRKTGLYWREKNQFES 318
+ ++PF++FVGYDPRED A++VCR S+L+ +++PV++ PI+Q DLR GLYWRE+ ES
Sbjct: 7 SAEEPFRVFVGYDPREDEAYEVCRRSLLRHASIPVDVRPIRQPDLRAAGLYWRERGPTES 66
Query: 319 TEFSFTRFLTPELANHQGWAMFVDCDFPLLG*YQGI 426
TEFSFTRFLTP LA ++GWA+FVDCDF L G+
Sbjct: 67 TEFSFTRFLTPYLAGYRGWALFVDCDFLYLADIAGL 102
Score = 54.7 bits (130), Expect = 7e-07
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 5/48 (10%)
Frame = +2
Query: 398 FLYLADIKELIDLI-----EDKYAIMCVQHDYAPKETTKMDGAVQTVY 526
FLYLADI L+ + + + A+ CV+H+YAP E TKMDGA+QTVY
Sbjct: 93 FLYLADIAGLLACLPSSDPDHRLAVACVKHEYAPAEATKMDGAIQTVY 140
>ref|ZP_00114641.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 256
Score = 90.1 bits (222), Expect(2) = 3e-25
Identities = 44/103 (42%), Positives = 60/103 (57%)
Frame = +1
Query: 88 LSNGNGNVPSPLPNGDGNTKQPFKIFVGYDPREDIAFQVCRHSILKRSTVPVEIIPIKQS 267
+S N+P+ P IF+GYDPRE A V S+ + S+VP+ I P+
Sbjct: 6 VSGPRPNLPASHHRPVSTVPSPIPIFIGYDPRERAATNVLIDSLYQLSSVPLAITPLVTP 65
Query: 268 DLRKTGLYWREKNQFESTEFSFTRFLTPELANHQGWAMFVDCD 396
L GLY RE++ +ST FSFTRFL P L ++GWA+F+DCD
Sbjct: 66 QLEAQGLYQRERDPKQSTAFSFTRFLVPHLMGYEGWALFMDCD 108
Score = 46.2 bits (108), Expect(2) = 3e-25
Identities = 20/38 (52%), Positives = 26/38 (67%)
Frame = +2
Query: 413 DIKELIDLIEDKYAIMCVQHDYAPKETTKMDGAVQTVY 526
DIK+L D +D+Y MCVQH++ P ET K G VQ+ Y
Sbjct: 114 DIKQLWDQRDDRYGAMCVQHEHVPGETVKFLGEVQSAY 151
>ref|NP_437086.1| conserved hypothetical protein [Sinorhizobium meliloti]
gi|25373166|pir||B95910 conserved hypothetical protein
SMb20806 [imported] - Sinorhizobium meliloti (strain
1021) magaplasmid pSymB gi|15140431|emb|CAC48946.1|
conserved hypothetical protein [Sinorhizobium meliloti]
Length = 229
Score = 80.9 bits (198), Expect(2) = 3e-23
Identities = 34/79 (43%), Positives = 57/79 (72%)
Frame = +1
Query: 160 IFVGYDPREDIAFQVCRHSILKRSTVPVEIIPIKQSDLRKTGLYWREKNQFESTEFSFTR 339
I++G+D +E +A+ V SIL++S++PV PI +++ ++ RE+N +STEFSF+R
Sbjct: 7 IYIGFDSKEVVAYHVLCQSILEKSSIPVTFTPISLNNVEN--IFTRERNPLQSTEFSFSR 64
Query: 340 FLTPELANHQGWAMFVDCD 396
FL P L+ ++GW++F DCD
Sbjct: 65 FLVPYLSRYEGWSLFADCD 83
Score = 48.9 bits (115), Expect(2) = 3e-23
Identities = 23/42 (54%), Positives = 28/42 (65%)
Frame = +2
Query: 401 LYLADIKELIDLIEDKYAIMCVQHDYAPKETTKMDGAVQTVY 526
L DI +L +L +D+YA MCV+HDY PK TK G VQT Y
Sbjct: 85 LMRTDIAQLWELRDDRYAAMCVKHDYVPKVETKFLGQVQTKY 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,392,213
Number of Sequences: 1393205
Number of extensions: 10317785
Number of successful extensions: 28881
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 28069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28872
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
