Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012697A_C01 KMC012697A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564445.1| hypothetical protein; protein id: At1g34355.1 [... 136 3e-31
pir||G86467 hypothetical protein F7P12.4 [imported] - Arabidopsi... 136 3e-31
emb|CAB38108.1| argininosuccinate lyase [Thermotoga neapolitana] 34 1.9
ref|XP_238586.1| hypothetical protein XP_238586 [Rattus norvegicus] 32 5.5
ref|NP_229578.1| argininosuccinate lyase [Thermotoga maritima] 32 7.1
>ref|NP_564445.1| hypothetical protein; protein id: At1g34355.1 [Arabidopsis thaliana]
Length = 1477
Score = 136 bits (342), Expect = 3e-31
Identities = 74/124 (59%), Positives = 86/124 (68%), Gaps = 7/124 (5%)
Frame = -2
Query: 618 EIPSPTIEDHILDFTLLHKRKQIDGQLVLLSEDVTLKINCMAEGLLCEPVQEFRESLVNP 439
EI SPT ED +L+ LL++ + D +LVLLS DVTLKI MAEG++CE EF ESLVNP
Sbjct: 1352 EIDSPTSEDQVLECALLYRNRNRDEKLVLLSNDVTLKIKAMAEGVICETPHEFYESLVNP 1411
Query: 438 FSERFLWKNSSARGQTWCCEDDVVLRERY----CRLPL---RKSSKGAASGLKLILLHNS 280
FSERF+W S+ARG+TW D+ VLRERY CR R S AA GLKLILLHNS
Sbjct: 1412 FSERFMWTESTARGRTWSHLDNDVLRERYNDRACRRKSTYNRGESGAAAKGLKLILLHNS 1471
Query: 279 QYGH 268
YGH
Sbjct: 1472 HYGH 1475
>pir||G86467 hypothetical protein F7P12.4 [imported] - Arabidopsis thaliana
gi|12323860|gb|AAG51901.1|AC023913_9 hypothetical
protein; 74608-67463 [Arabidopsis thaliana]
Length = 1587
Score = 136 bits (342), Expect = 3e-31
Identities = 74/124 (59%), Positives = 86/124 (68%), Gaps = 7/124 (5%)
Frame = -2
Query: 618 EIPSPTIEDHILDFTLLHKRKQIDGQLVLLSEDVTLKINCMAEGLLCEPVQEFRESLVNP 439
EI SPT ED +L+ LL++ + D +LVLLS DVTLKI MAEG++CE EF ESLVNP
Sbjct: 1462 EIDSPTSEDQVLECALLYRNRNRDEKLVLLSNDVTLKIKAMAEGVICETPHEFYESLVNP 1521
Query: 438 FSERFLWKNSSARGQTWCCEDDVVLRERY----CRLPL---RKSSKGAASGLKLILLHNS 280
FSERF+W S+ARG+TW D+ VLRERY CR R S AA GLKLILLHNS
Sbjct: 1522 FSERFMWTESTARGRTWSHLDNDVLRERYNDRACRRKSTYNRGESGAAAKGLKLILLHNS 1581
Query: 279 QYGH 268
YGH
Sbjct: 1582 HYGH 1585
>emb|CAB38108.1| argininosuccinate lyase [Thermotoga neapolitana]
Length = 284
Score = 33.9 bits (76), Expect = 1.9
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Frame = +2
Query: 287 WSRMSFKPLAAPFDDFLRGKRQYLSLKTTSSSQHHVCPRAELFFHKNLSENGFTRLSRNS 466
+SR+ + P+ + RGK +YL L S + + A +L E GF +L +
Sbjct: 105 FSRVQWNPI---YTQNSRGKFEYLLLHVLSQISYDLNRFASDIIFFSLPEIGFLKLPKEL 161
Query: 467 CTGS-----HSNPSAMQLI-----FKVTSSLRRTSCPS 550
CTGS NP ++L+ F V+ + S PS
Sbjct: 162 CTGSSIMPHKINPDPLELVRAYHHFVVSRMVMAVSLPS 199
>ref|XP_238586.1| hypothetical protein XP_238586 [Rattus norvegicus]
Length = 94
Score = 32.3 bits (72), Expect = 5.5
Identities = 15/47 (31%), Positives = 27/47 (56%)
Frame = -2
Query: 207 KFSLANICYHPCSKVK*RCWTHSEK*NTFCLLCNLILLHF*FKDLIP 67
KFSL N+C H C++ + +H++ +T+ L C + L + L+P
Sbjct: 27 KFSLTNLCVHTCTRTRTHTLSHTDP-HTYPLSCTQLYLKYIHLFLMP 72
>ref|NP_229578.1| argininosuccinate lyase [Thermotoga maritima]
Length = 393
Score = 32.0 bits (71), Expect = 7.1
Identities = 22/79 (27%), Positives = 38/79 (47%), Gaps = 5/79 (6%)
Frame = +2
Query: 287 WSRMSFKPLAAPFDDFLRGKRQYLSLKTTSSSQHHVCPRAELFFHKNLSENGFTRLSRNS 466
+S++ + P+ + RGK +YL L T S + + A +L E G+ +L +
Sbjct: 214 FSKVQWNPI---YTQNSRGKFEYLILHTLSQISYDLNRFASDIIFFSLPEIGYLKLPKEL 270
Query: 467 CTGS-----HSNPSAMQLI 508
CTGS NP ++L+
Sbjct: 271 CTGSSIMPHKINPDPLELV 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,469,493
Number of Sequences: 1393205
Number of extensions: 10354999
Number of successful extensions: 22095
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22091
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
